- Scientific Name
- Malus domestica
- Common Names
- apple tree, cultivated apple; apple; Malus communis, Malus pumila auct., Malus pumila var. domestica, Malus sylvestris var. domestica, Malus x domestica, Pyrus malus, Pyrus malus var. domestica
- Bioproject
- PRJCA010465
- Biosample
- SAMC817693
- Accession No.
- GWHBJVI00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 80,507,572 (SNP), 11,854,944 (Indel)
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Hui Li, Hengtao Zhang, Zhenhai Han
- Released Date
- 2023-12-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 104.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVI00000000 | - | MM106 phased haploid A genome | Draft genome in chromosome level | 2023-11-11 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVI00000000.1 | - | MM106 haplome A genome | Draft genome in chromosome level | 2023-11-28 |
DNA
GFF
RNA
CDS
Protein
|
| GWHBJVI00000000.2 | - | MM106 haplome A genome | Draft genome in chromosome level | 2023-12-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 688,888,040 |
| GC content | 38.38% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 153 |
| Maximum genome sequence length (bp) | 55,065,909 |
| Minimum genome sequence length (bp) | 22,389 |
| Average genome sequence length (bp) | 4,502,536 |
| Genome sequence N50 (bp) | 38,161,495 |
| Genome sequence N90 (bp) | 30,413,969 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 48,993 | 48,993 |
| Others | 1,236 | 1,236 |
| Total | 50,229 | 50,229 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,371 | 2,371 |
| chr10 | 3,360 | 3,360 |
| chr11 | 3,029 | 3,029 |
| chr12 | 2,576 | 2,576 |
| chr13 | 2,450 | 2,450 |
| chr14 | 2,481 | 2,481 |
| chr15 | 4,434 | 4,434 |
| chr16 | 2,887 | 2,887 |
| chr17 | 2,761 | 2,761 |
| chr2 | 2,982 | 2,982 |
| chr3 | 3,047 | 3,047 |
| chr4 | 2,432 | 2,432 |
| chr5 | 3,631 | 3,631 |
| chr6 | 2,441 | 2,441 |
| chr7 | 2,946 | 2,946 |
| chr8 | 2,345 | 2,345 |
| chr9 | 2,820 | 2,820 |
| Others | 1,236 | 1,236 |
| Total | 50,229 | 50,229 |