- Scientific Name
- mouse gut metagenome
- Common Names
- -
- Bioproject
- PRJCA001337
- Biosample
- SAMC124571
- Accession No.
- GWHABHO00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College
- Contact
- Hao Li, lihao@bjmu.edu.cn
- Sequence author(s)
- Hao Li
- Released Date
- 2020-04-22
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina Hiseq X Ten 60.0
- Download
- DNA
- Publication(s)
- Hao Li, et al. Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms. Nature Communications. 2020, 11(1): 3218.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABHO00000000 | - | mice.baseline.3 | Draft genome in chromosome level | 2020-04-22 |
DNA
CDS
|
Statistics of Genome Assembly
| Genome size (bp) | 178,867,314 |
| GC content | 48.18% |
| Scaffold sequence No. | 73,534 |
| Maximum scaffold sequence length (bp) | 621,236 |
| Minimum scaffold sequence length (bp) | 500 |
| Average scaffold sequence length (bp) | 2,432 |
| Scaffold N50 (bp) | 12,987 |
| Scaffold N90 (bp) | 704 |