- Scientific Name
- mouse gut metagenome
- Common Names
- -
- Bioproject
- PRJCA001337
- Biosample
- SAMC124598
- Accession No.
- GWHABIP00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College
- Contact
- Hao Li(lihao@bjmu.edu.cn)
- Sequence author(s)
- Hao Li
- Released Date
- 2020-04-23
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina Hiseq X Ten 60.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Hao Li, et al. Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms. Nature Communications. 2020, 11(1): 3218.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABIP00000000 | - | mice.trans.UIA.10 | Draft genome in scaffold level | 2020-04-23 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 60,548,243 |
| GC content | 49.68% |
| Scaffold sequence No. | 16,961 |
| Maximum scaffold sequence length (bp) | 459,122 |
| Minimum scaffold sequence length (bp) | 500 |
| Average scaffold sequence length (bp) | 3,570 |
| Scaffold N50 (bp) | 19,252 |
| Scaffold N90 (bp) | 977 |