- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJCA034231
- Biosample
- SAMC4489971
- Accession No.
- GWHFILF00000000.2
- GWH reannotation accession
- -
- GSA raw reads
- CRR1436793
- GVM variations of the species
- 26,938,825 (SNP), 3,724,480 (Indel)
- Submitter Organization
- Genome Biology Research Center, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yongshun Chen, chenys@genetics.ac.cn
- Sequence author(s)
- Yongshun Chen
- Released Date
- 2025-05-26
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.9
verkko 1.4 - Sequencing & coverage
- ONT 98.03
PacBio HiFi 42.67 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFILF00000000.1 | - | SL_T2T | Complete genome | 2025-01-15 |
DNA
|
| GWHFILF00000000.2 | - | SLT2T | Complete genome | 2025-05-26 |
DNA
GFF
RNA
CDS
Protein
|
| GWHFILF00000000.3 | - | SLT2T | Draft genome in chromosome level | 2025-08-04 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 829,940,505 |
| GC content | 35.27% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 37,821 | 37,821 |
| Total | 37,821 | 37,821 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,585 | 4,585 |
| chr10 | 3,022 | 3,022 |
| chr11 | 2,689 | 2,689 |
| chr12 | 2,906 | 2,906 |
| chr2 | 3,474 | 3,474 |
| chr3 | 3,658 | 3,658 |
| chr4 | 3,239 | 3,239 |
| chr5 | 2,794 | 2,794 |
| chr6 | 2,917 | 2,917 |
| chr7 | 2,884 | 2,884 |
| chr8 | 2,656 | 2,656 |
| chr9 | 2,997 | 2,997 |
| Total | 37,821 | 37,821 |