- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJCA034231
- Biosample
- SAMC4489971
- Accession No.
- GWHFILF00000000.3
- GWH reannotation accession
- -
- GSA raw reads
- CRR1436793
- GVM variations of the species
- 26,938,825 (SNP), 3,724,480 (Indel)
- Submitter Organization
- Genome Biology Research Center, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yongshun Chen, chenys@genetics.ac.cn
- Sequence author(s)
- Yongshun Chen
- Released Date
- 2025-08-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.25.0
- Sequencing & coverage
- ONT 98.03
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFILF00000000.1 | - | SL_T2T | Complete genome | 2025-01-15 |
DNA
|
| GWHFILF00000000.2 | - | SLT2T | Complete genome | 2025-05-26 |
DNA
GFF
RNA
CDS
Protein
|
| GWHFILF00000000.3 | - | SLT2T | Draft genome in chromosome level | 2025-08-04 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 831,451,106 |
| GC content | 35.29% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 37,650 | 37,650 |
| Total | 37,650 | 37,650 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,567 | 4,567 |
| chr10 | 3,005 | 3,005 |
| chr11 | 2,663 | 2,663 |
| chr12 | 2,893 | 2,893 |
| chr2 | 3,452 | 3,452 |
| chr3 | 3,647 | 3,647 |
| chr4 | 3,224 | 3,224 |
| chr5 | 2,786 | 2,786 |
| chr6 | 2,908 | 2,908 |
| chr7 | 2,878 | 2,878 |
| chr8 | 2,646 | 2,646 |
| chr9 | 2,981 | 2,981 |
| Total | 37,650 | 37,650 |