logo
Advanced

  • Lactuca sativa
  • Lsat_Salinas_v8
    • Scientific Name
    Lactuca sativa
    Common Names
    cultivated lettuce; garden lettuce;
    Bioproject
    PRJNA173551
    Biosample
    SAMN01730979
    Accession No.
    GCA_002870075.3
    RefSeq Accession No.
    GCF_002870075.3
    RefSeq vs GenBank similarity
    different
    Source
    NCBI
    External Links
    NCBI
    Submitter Organization
    Lettuce Genome Sequencing Consortium
    Released Date
    2025-05-22
    NCBI Released Date
    2020-04-13
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Download
    DNA GFF RNA CDS Protein
    RefSeq Download
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    Publication(s)
    -
    Assembly Accession RefSeq Accession RefSeq vs GenBank similarity Assembly Name Assembly Level NCBI Released Date Download Files
    GCA_002870075.4 GCF_002870075.4 different Lsat_Salinas_v11 Draft genome in scaffold level 2022-11-23 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_002870075.2 GCF_002870075.2 different Lsat_Salinas_v7 Draft genome in scaffold level 2020-04-13 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_002870075.3 GCF_002870075.3 different Lsat_Salinas_v8 Draft genome in scaffold level 2020-04-13 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein
    GCA_002870075.1 GCF_002870075.1 different Lsat_Salinas_v7 Draft genome in chromosome level 2018-01-09 DNA GFF RNA CDS Protein
    RefSeq DNA RefSeq GFF RefSeq RNA RefSeq CDS RefSeq Protein

    Statistics of Genome Assembly

    Genome size (bp) 2,388,455,848
    Chromosomes, organellas and plasmids sequnece No. 9
    Genome sequence No. 6,829
    GC content 38
    Scaffold sequence No. 9,958
    Scaffold L50 385
    Scaffold N50 (bp) 1,777,920
    Scaffold N75 (bp) 826,551
    Scaffold N90 (bp) 364,704
    Contig sequence No. 165,501
    Contig L50 23,446
    Contig N50 (bp) 28,364
    Unique components No. 9,958
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 155,543
    Ns gap sequence region length (bp) 181,172,847
    Gaps No. between scaffolds 3,138
    Annotation of Whole Genome Assembly
    Protein trna rrna ncrna Pseudogene Others Total
    Total 38282 0 0 0 0 400 38682

    Statistics of Genome Assembly

    Genome size (bp) 2,388,971,937
    Chromosomes, organellas and plasmids sequnece No. 11
    Genome sequence No. 6,831
    GC content 38
    Scaffold sequence No. 9,960
    Scaffold L50 385
    Scaffold N50 (bp) 1,777,920
    Scaffold N75 (bp) 826,148
    Scaffold N90 (bp) 364,685
    Contig sequence No. 165,503
    Contig L50 23,441
    Contig N50 (bp) 28,370
    Unique components No. 9,960
    No. of regions with alternate loci or patches 0
    Ns gap sequence No. (bp) 155,543
    Ns gap sequence region length (bp) 181,172,847
    Gaps No. between scaffolds 3,138
    Annotation of Whole Genome Assembly
    asse
    Protein trna rrna ncrna Pseudogene Others Total
    Total 35841 897 438349 2409 0 47539