Parameter | Type | Description | Example |
---|---|---|---|
Organism | String |
Select species of Gene you want to enrich. Human, default (yes) or Mouse |
|
DMR List | String | The file is in standard bed format and has at least 3 column where each DMR area is a row, and each column is separated by tab '\t' |
See #Example |
Analysis | String |
DMR Annotation, default (yes) and must required options GO enrichment analysis, default (yes) KEGG enrichment analysis, default (yes) |
|
Reference version | String |
The reference genome version that needs to be annotated We provide options for human(hg38 and hg19) and mouse(mm9 and mm10) |
hg38 |
TSS upstream and downstream | Number |
The TSS upstream and downstream parameter decides tssRegion, which specifies the promoter region (default ,upstream and downstream 2kb) |
uptream(2000bp) downstream(2000bp) |
pValue cutoff | Float | enrichment analysis cutoff to p value, optional, default (0.05), option: 0.01,0.05,0.1,number <= 1 | 0.05 |
padj cutoff | Float | enrichment analysis cutoff to q value, optional, default (0.1), option: 0.01,0.05,0.1,number <= 1 | 0.1 |