Differentially methylation regions (DMRs) enrichment and pathway analysis

#Example

Usages:

Parameter Type Description Example
Organism String Select species of Gene you want to enrich.
Human, default (yes) or Mouse
DMR List String The file is in standard bed format and has at least 3 column
where each DMR area is a row, and each column is separated by tab '\t'
See #Example
Analysis String DMR Annotation, default (yes) and must required options
GO enrichment analysis, default (yes)
KEGG enrichment analysis, default (yes)
Reference version String The reference genome version that needs to be annotated
We provide options for human(hg38 and hg19) and mouse(mm9 and mm10)
hg38
TSS upstream and downstream Number The TSS upstream and downstream parameter decides tssRegion,
which specifies the promoter region (default ,upstream and downstream 2kb)
uptream(2000bp)
downstream(2000bp)
pValue cutoff Float enrichment analysis cutoff to p value, optional, default (0.05), option: 0.01,0.05,0.1,number <= 1 0.05
padj cutoff Float enrichment analysis cutoff to q value, optional, default (0.1), option: 0.01,0.05,0.1,number <= 1 0.1

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