EMP7 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Zea mays

GRMZM2G041231

Mitochondrion

ccmFc

CDS

C-to-U

UUC=>UUU

F=>F

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Low	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

ccmFc

906

CDS

C-to-U

UCC=>UCU

S=>S

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Decreased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

ccmFc

966

CDS

C-to-U

CCC=>CCU

P=>P

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Decreased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

ccmFn

1553

CDS

C-to-U

UCU=>UUU

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	Embryo-lethal	Kernel	12 DAP	Direct Sequencing of PCR Products	0.00%	Unedited	Absent	26303363
W22	emp7-2	Mu Insertion	Mu is located at 595 bp of the ATG	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Poor	Decreased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

matR

1064

CDS

C-to-U

CCC=>CUC

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Low	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

nad1

536

CDS

C-to-U

UCG=>UUG

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rpl16

228

CDS

C-to-U

AUC=>AUU

I=>I

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Low	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rpl16

444

CDS

C-to-U

UCC=>UCU

S=>S

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rps12

284

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rps13

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rps3

CDS

C-to-U

UUC=>UUU

F=>F

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rps3

707

CDS

C-to-U

UCG=>UUG

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	High	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Low	None	26303363

Zea mays

GRMZM2G041231

Mitochondrion

rps4

549

CDS

C-to-U

UUC=>UUU

F=>F

Synonymous

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	emp7-1	Mu Insertion	Mu is located at 12 bp downstream from the start codon	NA	NA	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	Increased	26303363
W22	WT	Control	Control	Control	Normal	Kernel	12 DAP	Direct Sequencing of PCR Products	NA	Medium	None	26303363

Editing Factor:	EMP7
Synonym:	Empty Pericarp7
Description:	Encoding a mitochondrial E-subgroup pentatricopeptide repeat protein that is required for ccmFN editing, mitochondrial function and seed development in maize
Protein Family:	PPR
Subclass:	E
Physical Interaction:	NA
Construct Structure:	PLS-E
Gene ID & Species:	GRMZM2G041231 (Zea mays)
Edited Gene(s):	ccmFn matR rps3 rps12 rps13 rpl16 nad1 rps4 ccmFc
Editing Type(s):	C-to-U (27)
Publication(s):	[1] Empty pericarp7 encodes a mitochondrial E-subgroup pentatricopeptide repeat protein that is required for ccmFN editing, mitochondrial function and seed development in maize., The Plant journal : for cell and molecular biology, 2015. [PMID=26303363]

Summary

Editing Details