rpl16 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpl16
Function: Ribosomal protein
Species: 67
Editing Factors:15 (DYW2, EMP21, EMP5, EMP7, MEF35, MEF37, MEF8, MORF8, NUWA, ORRM2, ORRM3, ORRM4, OTP72, OTP90, PGN)
Editing Types:
C-to-U (208)
U-to-C (9)
Editing Events: 335 (C-to-U: 208   NA: 118   U-to-C: 9)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Ampelopteris proliferaChloroplast3
C-to-U: 1
NA: 2
77801-78205
78958-78966
78965
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast7
C-to-U: 1
NA: 2
U-to-C: 4
100307-100708
100389
100408
100615
100632
100679
101664-101672
NA
NA
CDS
NA
NA
CDS
NA
+
-
U-to-C
C-to-U
NA
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Arabidopsis thalianaMitochondrion12
C-to-U: 10
NA: 2
25076-25615
25104
25110
25176
25387
25407
NA
NA
CDS
NA
NA
NA
NA
NA
NA
NA
CDS
NA
+
-
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast1
U-to-C: 1
77837NA+U-to-CNA=>NANA=>NA
Athyrium anisopterumChloroplast3
C-to-U: 1
NA: 2
77542-77946
78704-78712
78711
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast3
C-to-U: 1
NA: 2
77380-77784
78542-78550
78549
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast3
C-to-U: 1
NA: 2
77531-77938
78694-78702
78701
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast3
C-to-U: 1
NA: 2
77488-77892
78650-78658
78657
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast3
C-to-U: 1
NA: 2
77619-78023
78780-78788
78787
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Brassica napusMitochondrion14
C-to-U: 14
201867-202406
201896
201927
202075
202306
202372
202378
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>TERM
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>TERM
NA=>NA
NA=>NA
NA=>NA
Calypogeia argutaMitochondrion1
NA: 1
55210-55617CDS+NANA=>NANA=>NA
Calypogeia integristipulaMitochondrion1
NA: 1
58186-58593CDS+NANA=>NANA=>NA
Calypogeia neogaeaMitochondrion1
NA: 1
57088-57495CDS+NANA=>NANA=>NA
Calypogeia suecicaMitochondrion1
NA: 1
56894-57301CDS+NANA=>NANA=>NA
Cannabis sativaMitochondrion2
NA: 2
233652-234086CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Castilleja paramensisMitochondrion1
NA: 1
188644-189120CDS+NANA=>NANA=>NA
Christella appendiculataChloroplast3
C-to-U: 1
NA: 2
77627-78031
78787-78795
78794
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Citrullus lanatusMitochondrion3
C-to-U: 3
36424
36528
36631
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
ACU=>AUU
CCA=>CUA
CUC=>UUC
T=>I
P=>L
L=>F
Cucumis sativusMitochondrion1
NA: 1
736214-736648CDS-NANA=>NANA=>NA
Cucurbita pepoMitochondrion5
C-to-U: 5
667051
667179
667282
667348
667354
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUA=>YUA
ACU=>AUU
CCA=>CUA
CCA=>CUA
UCG=>UUG
L=>L
T=>I
P=>L
P=>L
S=>L
Cyrtomium devexiscapulaeChloroplast3
C-to-U: 1
NA: 2
77399-77803
78594-78602
78601
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast3
C-to-U: 1
NA: 2
77542-77946
78742-78750
78749
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast3
C-to-U: 1
NA: 2
77667-78071
78834-78842
78841
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast3
C-to-U: 1
NA: 2
77290-77694
78457-78465
78464
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast3
C-to-U: 1
NA: 2
77593-77997
78756-78764
78763
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
C-to-U: 1
NA: 2
77579-77983
78747-78755
78754
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast3
C-to-U: 1
NA: 2
78265-78669
79420-79428
79427
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast3
C-to-U: 1
NA: 2
77523-77927
77525
78681-78689
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast4
C-to-U: 2
NA: 2
77444-77848
77446
78608-78616
78615
NA
CDS
NA
CDS
+
-
C-to-U
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast3
C-to-U: 1
NA: 2
77452-77856
77454
78614-78622
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast4
C-to-U: 2
NA: 2
77019-77423
77021
78183-78191
78190
NA
CDS
NA
CDS
+
-
C-to-U
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast3
C-to-U: 1
NA: 2
77456-77860
77458
78621-78629
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ginkgo bilobaMitochondrion10
C-to-U: 10
41215
41224
41238
41242
41255
41317
41371
41430
41530
41533
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
ACA=>AUA
CCA=>CUA
UCC=>UCU
CCA=>CUA
GCG=>GUG
CCC=>CUC
ACG=>AUG
AUC=>AUU
GCG=>GUG
R=>W
T=>I
P=>L
S=>S
P=>L
A=>V
P=>L
T=>M
I=>I
A=>V
Guadua angustifoliaChloroplast2
NA: 2
79938-80343
81435-81442
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Homalosorus pycnocarposChloroplast3
C-to-U: 1
NA: 2
78243-78647
79398-79406
79405
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast3
C-to-U: 1
NA: 2
77152-77556
78327-78335
78334
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Jenufa minutaChloroplast1
NA: 1
183521-183955CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast3
C-to-U: 1
NA: 2
76156-76560
77319-77327
77326
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Liriodendron tulipiferaChloroplast2
NA: 2
85138-85539CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Liriodendron tulipiferaMitochondrion2
NA: 2
511850-512284CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lotus japonicusMitochondrion6
C-to-U: 6
52901
52907
53204
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACU=>AUU
CCA=>CUA
CCA=>CUA
UCG=>UUG
UCG=>UUG
ACU=>AUU
T=>I
P=>L
P=>L
S=>L
S=>L
T=>I
Macrothelypteris torresianaChloroplast3
C-to-U: 1
NA: 2
77421-77825
78595-78603
78602
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast3
C-to-U: 1
NA: 2
76964-77368
78135-78143
78142
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataMitochondrion6
C-to-U: 6
295008
295305
295311
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
ACU=>AUU
ACU=>AUU
UCG=>UUG
UCG=>UUG
CCA=>CUA
P=>L
T=>I
T=>I
S=>L
S=>L
P=>L
Nelumbo nuciferaMitochondrion10
C-to-U: 9
NA: 1
373063-373578
373091
373097
373163
373177
373266
373334
373394
373396
373437
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCC=>UCU
GGC=>GGU
NA=>NA
ACA=>AUA
UCG=>UUG
ACU=>AUU
CCA=>CUA
CUC=>UUC
CGC=>UGC
CCA=>CUA
S=>S
G=>G
NA=>NA
U=>I
S=>L
U=>I
P=>L
L=>F
R=>C
P=>L
Nothoceros aenigmaticusPlastid6
NA: 6
102268-102673
102268-103702
103694-103702
Exon
NA
NA
Exon
Exon
Exon
-NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast3
C-to-U: 1
NA: 2
76618-77022
77794-77802
77801
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion22
C-to-U: 20
U-to-C: 2
15096
15146
15151
15197
15221
15226
15230
15248
15377
15437
15452
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
UCU=>UUU
CCU=>CUU
UCU=>UUU
CCU=>CUU
UCA=>UUA
UCA=>UUA
GUC=>GCC
GUC=>GCC
NA=>NA
ACA=>AUA
NA=>NA
ACA=>AUA
UUC=>UUU
UUC=>UUU
ACC=>ACU
UCU=>UUU
ACC=>ACU
UCU=>UUU
GCG=>GUG
GCG=>GUG
ACG=>AUG
T=>M
S=>F
P=>L
S=>F
P=>L
S=>L
S=>L
V=>A
V=>A
NA=>NA
T=>I
NA=>NA
T=>I
F=>F
F=>F
T=>T
S=>F
T=>T
S=>F
A=>V
A=>V
T=>M
Orthotrichum diaphanumMitochondrion1
NA: 1
95196-95603CDS+NANA=>NANA=>NA
Orthotrichum macrocephalumMitochondrion1
NA: 1
95077-95484CDS+NANA=>NANA=>NA
Orthotrichum speciosumMitochondrion1
NA: 1
95307-95714CDS+NANA=>NANA=>NA
Oryza sativa Japonica GroupMitochondrion11
C-to-U: 11
174194
174239
174371
174373
174374
174433
174501
174590
174604
174670
174676
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phoenix dactyliferaMitochondrion13
C-to-U: 13
237756
237789
237820
237839
237925
237966
237968
238028
238096
238185
238199
238265
238271
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GGC=>GGU
CAG=>UAG
CCA=>CUA
ACA=>AUA
CGC=>UGC
UCG=>UUG
CUC=>CUU
UCC=>UCU
ACC=>AUC
UCU=>UUU
CCA=>CUA
CUC=>CUU
CUC=>UUC
G=>G
Q=>TERM
P=>L
T=>I
R=>C
S=>L
L=>L
S=>S
T=>I
S=>F
P=>L
L=>L
L=>F
Pseudophegopteris auritaChloroplast3
C-to-U: 1
NA: 2
77074-77478
78234-78242
78241
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Psilotum nudumMitochondrion9
C-to-U: 9
194956
194973
195029
195119
195133
195143
195236
195315
195688
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
NA=>NA
CCU=>CUU
CCU=>CUU
ACC=>ACU
CUC=>UUC
GUC=>GUU
UCA=>UUA
GCA=>GUA
R=>W
NA=>NA
P=>L
P=>L
T=>T
L=>F
V=>V
S=>L
A=>V
Pteridium aquilinum subsp. aquilinumChloroplast3
C-to-U: 1
NA: 2
79399-79803
80562-80570
80569
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast3
C-to-U: 1
NA: 2
78318-78722
79485-79493
79492
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhizanthella gardneriPlastid1
C-to-U: 1
24348NA+C-to-UNA=>NANA=>NA
Salix purpureaMitochondrion2
NA: 2
420055-420465CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Salvia miltiorrhizaMitochondrion1
NA: 1
168331-168807CDS-NANA=>NANA=>NA
Schizaea elegansChloroplast3
C-to-U: 1
NA: 2
70496-70900
71783-71791
71790
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Sequoia sempervirensChloroplast1
NA: 1
12993-13415NA-NANA=>NANA=>NA
Stegnogramma sagittifoliaChloroplast3
C-to-U: 1
NA: 2
77221-77625
78388-78396
78395
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Syntrichia filarisMitochondrion1
NA: 1
96508-96915CDS+NANA=>NANA=>NA
Tetraphis pellucidaMitochondrion2
NA: 2
27466-27873CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast3
C-to-U: 1
NA: 2
77458-77862
78624-78632
78631
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast3
C-to-U: 1
NA: 2
77449-77853
78609-78617
78616
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)