rps13 - Plant Editosome Database - BIG Data Center

Summary

Gene: rps13
Function: Ribosomal protein
Species: 16
Editing Factors:4 (EMP21, EMP7, PPR27, SlORRM4)
Editing Types:
C-to-U (121)
U-to-C (6)
Editing Events: 134 (C-to-U: 121   NA: 7   U-to-C: 6)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Asclepias syriacaMitochondrion2
NA: 2
402602-402952CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta macrocarpaMitochondrion2
C-to-U: 2
285415
285593
CDS
CDS
+C-to-U
C-to-U
AUC=>AUU
UCA=>UUA
I=>I
S=>L
Beta vulgaris subsp. maritimaMitochondrion2
C-to-U: 2
285456
285634
CDS
CDS
+C-to-U
C-to-U
AUC=>AUU
UCA=>UUA
I=>I
S=>L
Beta vulgaris subsp. vulgarisMitochondrion2
C-to-U: 2
107155
107333
CDS
CDS
-C-to-U
C-to-U
AUC=>AUU
UCA=>UUA
I=>I
S=>L
Citrullus lanatusMitochondrion3
C-to-U: 3
330859
330889
330933
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UCA=>UYA
UCU=>UYU
CGU=>YGU
S=>S/L
S=>S/F
R=>R/C
Cucurbita pepoMitochondrion3
C-to-U: 3
110586
110630
110660
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGU=>YGU
UCA=>UYA
S=>L
R=>R/C
S=>S/L
Ginkgo bilobaMitochondrion1
NA: 1
36226-36606CDS-NANA=>NANA=>NA
Nelumbo nuciferaMitochondrion7
C-to-U: 6
NA: 1
99517-99867
99581
99612
99768
99812
99842
99863
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
C-to-U
NA
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
CGU=>UGU
UCA=>UUA
NA=>NA
UCA=>UUA
CGU=>UGU
S=>L
S=>L
R=>C
S=>L
NA=>NA
S=>L
R=>C
Nothoceros aenigmaticusMitochondrion2
U-to-C: 2
45703CDS
CDS
-U-to-C
U-to-C
UAG=>CAG
UAG=>CAG
TERM=>Q
TERM=>Q
Ophioglossum californicumMitochondrion16
C-to-U: 16
128029
128059
128071
128077
128209
128233
128239
128342
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
UCU=>UUU
UCU=>UUU
GUC=>GUU
GUC=>GUU
UCA=>UUA
UCA=>UUA
UCG=>UUG
UCG=>UUG
ACU=>AUU
ACU=>AUU
ACU=>AUU
ACU=>AUU
UCG=>UUG
UCG=>UUG
P=>L
P=>L
S=>F
S=>F
V=>V
V=>V
S=>L
S=>L
S=>L
S=>L
T=>I
T=>I
T=>I
T=>I
S=>L
S=>L
Oryza sativa Japonica GroupMitochondrion8
C-to-U: 8
242555
242586
242742
242786
242816
242828
242830
242837
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
CGU=>UGU
UCA=>UUA
CGU=>UGU
AUC=>AUU
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
R=>C
S=>L
R=>C
I=>I
S=>L
S=>L
S=>L
Phaeoceros laevisMitochondrion3
NA: 1
U-to-C: 2
82096-82464
82227
82311
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion2
C-to-U: 2
396271
396639
CDS
CDS
+C-to-U
C-to-U
CGA=>UGA
ACG=>AUG
R=>TERM
T=>M
Psilotum nudumMitochondrion7
C-to-U: 7
75223
75252
75354
75365
75382
75414
75426
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
AUC=>AUU
CGU=>UGU
UCU=>UUU
ACU=>AUU
CGU=>UGU
P=>L
S=>L
I=>I
R=>C
S=>F
T=>I
R=>C
Zea mays subsp. maysMitochondrion18
C-to-U: 18
319617
319638
319668
319712
319868
319899
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGU=>UGU
UCA=>UUA
UCA=>UUA
CGU=>UGU
UCG=>UUG
UCA=>UUA
CGU=>UGU
CGU=>UGU
UCG=>UUG
UCA=>UUA
CGU=>UGU
UCA=>UUA
UCG=>UUG
UCA=>UUA
CGU=>UGU
UCA=>UUA
UCA=>UUA
S=>L
R=>C
S=>L
S=>L
R=>C
S=>L
S=>L
R=>C
R=>C
S=>L
S=>L
R=>C
S=>L
S=>L
S=>L
R=>C
S=>L
S=>L
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)