TRX z - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: TRX z
Synonym: PAP10; THIOREDOXIN PUTATIVE PLASTIDIC; TRX P; Thioredoxin z
Description: OsTRX z protein physically interacts with OsMORFs in a redox-dependent manner and that the redox state of a conserved cysteine in the MORF box is essential for MORF-MORF interactions; wp2 and OsTRX z knockout lines show reduced editing efficiencies in many plastidial-encoded genes especially under high-temperature conditions; Results suggest that thioredoxin z regulates chloroplast RNA editing in plants by controlling the redox state of MORFs
Protein Family: Thioredoxin (TRX)
Subclass: NA
Physical Interaction: MORF2; MORF8; MORF9; OsFLN1; OsFLN2
Construct Structure: NA
Gene ID & Species: LOC_Os08g29110 (Oryza sativa)
Edited Gene(s): ndhA    ndhB    ndhD    ndhF    ndhG    rpoB    rpl2    rps8    ycf3    rps14    atpA
Editing Type(s): C-to-U (184)
Publication(s): [1] white panicle2 encoding thioredoxin z, regulates plastid RNA editing by interacting with multiple organellar RNA editing factors in rice, New Phytol, 2021. [doi:10.1111/nph.17047]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Oryza sativa LOC_Os08g29110 Chloroplast atpA 1148 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products95.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products97.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products76.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products97.00%HighRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products85.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products82.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products79.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products87.00%HighSimilar33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhA 1070 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products88.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products90.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products53.00%MediumDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products97.00%HighRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products41.00%MediumNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products17.00%PoorDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products17.00%PoorDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products44.00%MediumRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhA 473 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products26.00%LowDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products77.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products11.00%PoorDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products13.00%PoorDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products75.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhA 563 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products74.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products78.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products3.00%PoorDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products5.00%PoorDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products69.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 1481 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products94.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products95.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products94.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products92.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products86.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products83.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products91.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 467 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products87.00%HighDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products77.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 586 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products81.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products57.00%MediumDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products42.00%MediumDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products88.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 611 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products85.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products69.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products26.00%LowDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products17.00%PoorDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products77.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 704 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 737 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products95.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products96.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products66.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products16.00%PoorNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products10.00%PoorSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products8.00%PoorSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products30.00%LowRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 830 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products79.00%HighDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products69.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhB 836 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products89.00%HighDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products82.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhD 878 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products89.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products90.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products68.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products96.00%HighRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products84.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products47.00%MediumDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products40.00%MediumDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products84.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhF 62 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products74.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products89.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products86.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products90.00%HighIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products78.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products87.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products84.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products82.00%HighSimilar33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhG 11 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products75.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products83.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products72.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products87.00%HighIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products49.00%MediumNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products35.00%LowDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products35.00%LowDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products54.00%MediumRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast ndhG 347 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products86.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products94.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products66.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products96.00%HighRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products72.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products56.00%MediumDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products52.00%MediumDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products78.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast rpl2 2 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products78.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products82.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products71.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products84.00%HighSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products65.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products68.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products67.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products57.00%MediumSimilar33119889
Oryza sativa LOC_Os08g29110 Chloroplast rpoB 467 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products34.00%LowNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products60.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products90.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products58.00%MediumIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products56.00%MediumNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products83.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products83.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products49.00%MediumRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast rpoB 545 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products41.00%MediumNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products62.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products88.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products60.00%HighIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products79.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products91.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products91.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products73.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast rpoB 560 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products40.00%MediumNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products61.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products86.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products57.00%MediumIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products78.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products88.00%HighIncreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products88.00%HighIncreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products72.00%HighRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast rps14 80 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products87.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products89.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products31.00%LowDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products87.00%HighRestored33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products35.00%LowNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products22.00%LowDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products24.00%LowDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products36.00%LowRestored33119889
Oryza sativa LOC_Os08g29110 Chloroplast rps8 182 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products90.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products94.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products94.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteIncreased33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products77.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products86.00%HighSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products85.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products74.00%HighSimilar33119889
Oryza sativa LOC_Os08g29110 Chloroplast ycf3 185 CDS NA NA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Japonica cultivar NipponbareWTWild TypeGrown at 25℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 25℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutwp2 mutant were indistinguishable from wild‐type seedlings grown at 25°C; Pigment contents and chloroplast ultrastructure in wp2 mutant and wild‐type seedlings were almost identical when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareL1KnockoutGrown at 25℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 25°CNA10 daysBulk sequencing of RT‐PCR products97.00%HighSimilar33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 25℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNANA10 daysBulk sequencing of RT‐PCR products100.00%CompleteSimilar33119889
Japonica cultivar NipponbareWTWild TypeGrown at 35℃No mutantNormalNA10 daysBulk sequencing of RT‐PCR products96.00%HighNone33119889
Japonica cultivar Nipponbarewp2KnockoutGrown at 35℃; A single base transition (G-T) caused substitution of a tryptophan residue (111) by a cysteine residue next to the conserved CXXC motifKnockoutSeedlings of the wp2 mutant were albinic when grown at 35°C; The pigment contents were significantly decreased at 35°C; Chloroplasts of wp2 were abnormal in shape and contained no thylakoid membranes at 35°CNA10 daysBulk sequencing of RT‐PCR products73.00%HighDecreased33119889
Japonica cultivar NipponbareL1KnockoutGrown at 35℃; An "A" insertionKnockoutSeedlings of the L1 mutant were albinic when grown at 35°CNA10 daysBulk sequencing of RT‐PCR products69.00%HighDecreased33119889
Japonica cultivar Nipponbare and IR36 (indica)cpComplementationGrown at 35℃; For complementation of the wp2 mutant, the LOC_Os08g29110 coding sequence was cloned into the pCAMBIA1300‐221‐3*FLAG binary vector. The construct was introduced into Agrobacterium tumefaKnockoutNormalNA10 daysBulk sequencing of RT‐PCR products95.00%HighRestored33119889
Last update: Sep 2026 (version 2.0)