ndhA - Plant Editosome Database - BIG Data Center

Summary

Gene: ndhA
Function: NADH-plastoquinone oxidoreductase
Species: 59
Editing Factors:3 (ORRM1, OsSLC1, YL)
Editing Types:
C-to-U (105)
U-to-C (10)
Editing Events: 208 (C-to-U: 105   NA: 93   U-to-C: 10)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast2
NA: 2
115529-116086
116940-117497
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Alsophila spinulosaChloroplast2
NA: 2
120596-121153
122038-122595
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast2
NA: 2
116436-116993
117952-118509
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast20
C-to-U: 10
NA: 2
U-to-C: 8
133784-134328
133815
133818
133923
134163
134194
134247
135177-135732
135180
135188
135189
135210
135231
135233
135254
135257
135293
135425
135467
135629
NA
NA
NA
NA
NA
NA
NA
NA
NA
CDS
NA
NA
NA
NA
NA
NA
NA
CDS
NA
NA
+
-
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
NA
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
NA
C-to-U
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium pekinenseChloroplast2
NA: 2
116002-116559
117461-118018
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast2
NA: 2
115378-115935
116868-117431
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast2
NA: 2
115786-116343
117309-117866
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
NA: 2
115908-116465
117424-117981
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
NA: 2
116010-116567
117530-118087
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast3
NA: 2
U-to-C: 1
115412-115969
116937-117509
116939
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast8
C-to-U: 8
119898
120293
120383
120809
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CCU=>UCU
UCG=>UUG
UCA=>UUA
UCA=>UUA
CCU=>UCU
UCG=>UUG
S=>L
S=>L
P=>S
S=>L
S=>L
S=>L
P=>S
S=>L
Cystopteris chinensisChloroplast2
NA: 2
115975-116532
117505-118062
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast3
C-to-U: 1
NA: 2
115843-116400
117359-117916
117915
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast3
C-to-U: 1
NA: 2
116035-116592
117543-118100
118099
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
C-to-U: 1
NA: 2
115825-116382
117339-117896
117895
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid4
C-to-U: 4
110858
111365
111455
111878
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCG=>UUG
UCA=>UUA
S=>L
S=>F
S=>L
S=>L
Diplaziopsis cavalerianaChloroplast2
NA: 2
116522-117079
118035-118592
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast2
NA: 2
116469-117026
117986-118543
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast2
NA: 2
116196-116753
117715-118272
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast2
NA: 2
115939-116496
117451-118008
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
NA: 2
115517-116074
117029-117586
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast2
NA: 2
115566-116123
117078-117635
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
NA: 2
116090-116647
117616-118173
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast2
NA: 2
124717-125274
126193-126750
NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast2
NA: 2
115824-116381
117324-117899
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast2
C-to-U: 2
122552
122777
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Hevea brasiliensisChloroplast2
C-to-U: 2
126019
126414
CDS
CDS
-C-to-U
C-to-U
CCU=>UCU
UCA=>UUA
P=>S
S=>L
Homalosorus pycnocarposChloroplast2
NA: 2
116777-117334
118286-118843
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast2
NA: 2
116490-117047
117975-118532
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast2
NA: 2
114948-115505
116459-117016
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast3
C-to-U: 3
129000
129222
129729
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
UCA=>UUA
S=>L
S=>F
S=>L
Isoetes flaccidaChloroplast2
NA: 2
111553-112108
112883-113430
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast4
C-to-U: 4
121563
121714
122070
122295
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CUU=>UUU
UCG=>UUG
UCC=>UUC
S=>L
L=>F
S=>L
S=>F
Lygodium japonicumChloroplast2
NA: 2
120354-120914
121833-122390
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Macrothelypteris torresianaChloroplast2
NA: 2
115930-116487
117433-117990
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Mankyua chejuensisChloroplast2
NA: 2
125206-125757
126617-127174
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast2
NA: 2
119336-119893
120916-121473
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast2
NA: 2
115613-116170
117115-117672
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Myriopteris lindheimeriChloroplast3
NA: 2
U-to-C: 1
118415-118973
119871-120428
120269
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast4
C-to-U: 4
121713
122445
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCC=>UUC
UCA=>UUA
UCA=>UUA
UCC=>UUC
S=>F
S=>L
S=>L
S=>F
Nicotiana tomentosiformisChloroplast3
C-to-U: 3
121480
121987
122212
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCC=>UUC
UCA=>UUA
UCA=>UUA
S=>F
S=>L
S=>L
Nothoceros aenigmaticusPlastid6
NA: 6
128790-129345
128790-130746
130202-130746
Exon
NA
NA
Exon
Exon
Exon
+NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
NA: 2
114132-114689
115632-116189
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast4
C-to-U: 4
113719
114226
115327
115750
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
S=>L
S=>F
S=>L
S=>L
Pelargonium alternansChloroplast3
C-to-U: 3
128916
129141
129648
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCA=>UUA
S=>F
S=>L
S=>L
Pseudophegopteris auritaChloroplast2
NA: 2
114981-115538
116483-117040
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast2
NA: 2
117103-117660
118598-119155
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast4
C-to-U: 4
35556
36063
36153
36576
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCG=>UUG
UCA=>UUA
S=>L
S=>F
S=>L
S=>L
Silene conicaChloroplast3
C-to-U: 3
116598
117105
117330
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCA=>UUA
S=>L
S=>F
S=>L
Silene latifoliaChloroplast3
C-to-U: 3
118134
118641
118866
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCA=>UUA
S=>L
S=>F
S=>L
Silene noctifloraChloroplast3
C-to-U: 3
118951
119458
119683
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCC=>UUC
UCA=>UUA
UCA=>UUA
S=>F
S=>L
S=>L
Silene vulgarisChloroplast6
C-to-U: 6
118006
118513
118738
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCC=>UUC
UCC=>UUC
S=>L
S=>L
S=>L
S=>L
S=>F
S=>F
Solanum lycopersicumChloroplast6
C-to-U: 6
121132
121864
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCC=>UUC
UCA=>UUA
UCC=>UUC
UCA=>UUA
S=>L
S=>F
S=>F
S=>L
S=>F
S=>L
Stegnogramma sagittifoliaChloroplast2
NA: 2
115770-116327
117288-117845
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Syntrichia ruralisChloroplast1
NA: 1
103166-105013NA+NANA=>NANA=>NA
Takakia lepidozioidesChloroplast2
NA: 2
126760-127310
128163-128724
NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast2
NA: 2
115820-116377
117346-117903
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
NA: 2
115493-116050
117019-117576
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)