Silene conica - Plant Editosome Database - BIG Data Center

Summary

Species: Silene conica
NCBI Taxonomy: 39875
Organelle:Chloroplast (NC_016729.1)
Edited Genes:12
Editing Events:26
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA110119CDS-mRNAC-to-UUCC=>UCUS=>S
matK1NACDSNAmRNAC-to-UNA=>NANA=>NA
ndhA3117330
117105
116598
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCC=>UUC
S=>L
S=>L
S=>F
ndhB8136925
137243
137362
137513
137522
137606
137612
138257
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
CAU=>UAU
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
CCA=>CUA
S=>L
P=>L
H=>Y
P=>L
S=>F
S=>L
S=>L
P=>L
ndhD3112949
113453
113834
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCU=>CUU
UCA=>UUA
ACG=>AUG
P=>L
S=>L
T=>M
ndhG1115550CDS-mRNAC-to-UACA=>AUAT=>I
petL162522CDS+mRNAC-to-UCCU=>CUUP=>L
psbZ132513CDS+mRNAC-to-UUCA=>UUAS=>L
rpoA174191CDS-mRNAC-to-UUCU=>UUUS=>F
rpoB323846
23768
23753
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCG=>UUG
S=>L
S=>L
S=>L
rps2114248CDS-mRNAC-to-UUCA=>UUAS=>L
trnI-CAU280915-80988
146350-146423
Exon
Exon
-
+
tRNA
tRNA
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)