| Dataset ID | Project | Species | Cultivar | Tissue | Treatment | Phenotype in original study |
|---|
SugarcaneOmics
The SugarCane multi-Omics Database
SugarcaneOmics
The SugarCane multi-Omics Database
Summary
| Gene ID: | CC00g369230 |
| Type: | mRNA |
| Assembly: | S. hybrid cultivar CC-01-1940 |
| Position: | contig_22077: 17700..20828 (+) |
| Length: | 3129 bp |
| Transcript: | |
| Description: | Ubiquitin-conjugating enzyme E2 5A |
Curated Knowledge
| Trait | Publication |
|---|---|
| This table is gene knowledge! |
Gene Function
Transcription Factor
Homology
| Gene ID | Gene Name | Species | Genomic Location | Function |
|---|
Genome Variation
Note:
Cutoff of TajimaD for S.spontaneum is -2.1, S. hybrid cultivar is -1.75.
Cutoff of Pi for S.spontaneum vs S. hybrid cultivar is 0.79.
Cutoff of Fst for S.spontaneum vs S. hybrid cultivar is 0.25.
| VarID | Chr | Position | Type | Alleles (ref/alt) | MAF | Consequence |
|---|
Gene Expression profile for homology genes (Np-X gene)
Plotting
all homology genes
| Gene ID |
|---|
Plotting
single gene
Differential Expression Gene
GEN0013
| Dataset | Gene ID | Group A | Group B | FoldChange (A/B) | P-value | FDR |
|---|---|---|---|---|---|---|
| Note: Only comparisons with p-value <0.05 are shown in the table. | ||||||
Project List