Stomach
UMAP Explorer
Explore gene or TE expression on the integrated metacell UMAP plots, alongside metadata such as sample, cell type, cancer type, donor, gender, age, tissue site, tumor status, stage, and project.
- By default, a representative subset of ≤5,000 cells is displayed for quick preview, with an option to switch to “All” to view the full map.
- The interface provides a customizable layout, allowing users to freely display two genes/TEs, metadata, or a combination side by side according to their analytical needs.
- For metadata UMAP, click the legend blocks to show/hide corresponding categories.
Cells to view:
Subset
Layout:
feature & cell meta
Tumor-Specific TEs
Visualize tumor-specific TE expression across different cancer subtypes. The top 5 TEs in each subtype are labeled, and the accompanying chart shows an overview of the TE class composition.
There is no tumor-specifc TE expression heatmap.
There is no tumor-specifc TE statistics plot.
Differential TE Expression across Tumor Stages
TE-Gene Co-expression in Tumor cells
WGCNA Module Dendrogram
Tumor-Specific Module Expression
Visualize tumor-specific gene/TE module expression across cell types. Tumor cells are highlighted in red.
Module Composition
Visualize the composition of cancer-related genes and TEs in each module, with oncogene, tumor suppressor gene (TSG), and cancer driver annotations from OncoKB and NCG.