Accession PRJCA007539
Title Study on the Pathogenic Genes and the Tumor Immune Evasion Mechanism of Juvenile-onset Recurrent Respiratory Papillomatosis Based on Multi-omics
Relevance Medical
Data types Transcriptome or Gene expression
Organisms Homo sapiens
Description Juvenile-onset recurrent respiratory papillomatosis (JORRP) is a rare disease in children, caused by human papillomavirus (HPV) type 6 and 11. At present, it is believed that the high recurrence rate of JORRP is mediated by compromised anti-viral and anti-tumor immune responses. While the host pathogenic genes and the immune evasion mechanism of HPV promote its persistent and recurrent infection remains unknown. In this study, we intend to carry out multi-omics joint analysis of the genome transcriptome and proteome landscapes of tumor tissue and peripheral blood in JORRP by whole exome sequencing (WES), single-cell transcriptome profiling (single-cell RNA sequencing (scRNA-seq)) and mass cytometry. The aim of this study is to investigate the disease-related pathogenic genes, to identify tumor subtypes, to screen the potential markers of diagnosis or prognosis for disease, and to explore the cell subsets and gene expression profiles of pathogenic or functionally deficient immune cell in tumor tissue. Furthermore, we intend to detect the key molecules and signal pathways by immunohistochemistry and western blotting, and evaluate the function of critical immune cells in co-culture with epithelial cells in vitro. This research, based on quickly obtained information from high-throughput experiments, would analyze the molecular regulation and interaction networks of all kinds of cells in the tumor microenvironment, so as to provide accurate targets and inspirations for clinical treatment.
Sample scope Multiisolate
Release date 2021-12-11
Publication
PubMed ID Article title Journal name DOI Year
35350785 Reduced NK Cell Cytotoxicity by Papillomatosis-Derived TGF-β Contributing to Low-Risk HPV Persistence in JORRP Patients Frontiers in Immunology 10.3389/fimmu.2022.849493 2022
Grants
Agency program Grant ID Grant title
The Special Fund of the Pediatric Medical Coordinated Development Center of Beijing Hospitals Authority XTCX201823
Submitter Jun Wang (trentxy@163.com)
Organization Beijing Tongren Hospital
Submission date 2021-12-11

Project Data

Resource name Description
BioSample (21)  show -