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  • Glycine max
  • Gmax_ZH13_v2.0
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA000902
    Biosample
    SAMC044340
    Accession No.
    GWHAAEV00000000.2
    GWH reannotation accession
    -
    GSA raw reads
    CRR031672, CRR031683, CRR031673, CRR031684, CRR031681,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    The state key laboratory of plant cell and chromosome engineering, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation
    Contact
    Yanting Shen, ytshen@genetics.ac.cn
    Sequence author(s)
    Yanting Shen, Huilong Du, Yucheng Liu, Lingbin Ni, Chengzhi Liang, Zhixi Tian
    Released Date
    2025-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    Canu v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    Sequencing & coverage
    PacBio 120.0
    BioNano 639.0
    Illumina HiSeq 2500 45.0
    Hi-C 125.0
    Iso-seq 8.93
    RNA-seq 353.0
    smRNA-seq 67.3
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    -
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHAAEV00000000 - Gmax_ZH13 Draft genome in chromosome level 2018-07-27 DNA GFF RNA CDS Protein
    GWHAAEV00000000.1 - Gmax_ZH13_v2.0 Draft genome in chromosome level 2019-09-16 DNA GFF RNA CDS Protein
    GWHAAEV00000000.2 - Gmax_ZH13_v2.0 Draft genome in chromosome level 2025-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,011,840,349
    GC content 35.02%
    Chromosomes sequence No. 20
    Organellas sequence No. 2
    Genome sequence No. 58
    Maximum genome sequence length (bp) 60,669,500
    Minimum genome sequence length (bp) 20,602
    Average genome sequence length (bp) 17,445,523
    Genome sequence N50 (bp) 51,952,677
    Genome sequence N90 (bp) 42,350,739
    Annotation of Whole Genome Assembly
    Protein tRNA rRNA Others Total
    Chromosome 151,500 756 268 1,954 154,478
    Chloroplast 80 29 6 0 115
    Mitochondrion 56 28 2 0 86
    Others 699 299 21 28 1,047
    Total 152,335 1,112 297 1,982 155,726
    Annotation Details
    ChrID Protein tRNA rRNA Others Total
    chr1 6,763 30 0 117 6,910
    chr10 8,035 34 0 113 8,182
    chr11 7,115 47 0 93 7,255
    chr12 6,978 39 0 91 7,108
    chr13 10,029 55 37 88 10,209
    chr14 6,314 25 0 98 6,437
    chr15 7,436 44 1 99 7,580
    chr16 5,789 23 1 69 5,882
    chr17 6,996 33 0 87 7,116
    chr18 7,951 42 2 110 8,105
    chr19 6,591 35 224 116 6,966
    chr2 8,638 57 0 91 8,786
    chr20 7,349 32 1 93 7,475
    chr3 6,721 40 0 111 6,872
    chr4 7,716 28 1 102 7,847
    chr5 6,583 38 1 106 6,728
    chr6 9,082 43 0 109 9,234
    chr7 7,574 28 0 62 7,664
    chr8 9,795 55 0 110 9,960
    chr9 8,045 28 0 89 8,162
    Chloroplast 80 29 6 0 115
    Mitochondrion 56 28 2 0 86
    Others 699 299 21 28 1,047
    Total 152,335 1,112 297 1,982 155,726