- Scientific Name
- Glycine max
- Common Names
- soybeans; soybean; Phaseolus max
- Bioproject
- PRJCA000902
- Biosample
- SAMC044340
- Accession No.
- GWHAAEV00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR031672, CRR031683, CRR031673, CRR031684, CRR031681, more
- GVM variations of the species
- 40,350,378 (SNP), 12,368,700 (Indel)
- Submitter Organization
- The state key laboratory of plant cell and chromosome engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yanting Shen, shenyanting@gzucm.edu.cn
- Sequence author(s)
- Yanting Shen, Huilong Du, Yucheng Liu, Lingbin Ni, Chengzhi Liang, Zhixi Tian
- Released Date
- 2019-09-16
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1 - Sequencing & coverage
- PacBio 120.0
BioNano 639.0
Illumina HiSeq 2500 45.0
Hi-C 125.0
Iso-Seq 8.93
RNA-seq 353.0
smRNA-seq 67.3 - Download
- DNA GFF RNA Protein
- Publication(s)
- Yanting Shen, et al. Update soybean Zhonghuang 13 genome to a golden reference. SCIENCE CHINA Life Sciences. 2019.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAEV00000000 | - | Gmax_ZH13 | Draft genome in scaffold level | 2018-07-27 |
DNA
GFF
RNA
Protein
|
| GWHAAEV00000000.1 | - | Gmax_ZH13_v2.0 | Draft genome in scaffold level | 2019-09-16 |
DNA
GFF
RNA
Protein
|
| GWHAAEV00000000.2 | - | Gmax_ZH13_v2.0 | Draft genome in scaffold level | 2026-03-01 |
|
Statistics of Genome Assembly
| Genome size (bp) | 1,011,840,349 |
| GC content | 35.02% |
| Chromosomes sequence No. | 20 |
| Organellas sequence No. | 2 |
| Genome sequence No. | 58 |
| Maximum genome sequence length (bp) | 60,669,500 |
| Minimum genome sequence length (bp) | 20,602 |
| Average genome sequence length (bp) | 17,445,523 |
| Genome sequence N50 (bp) | 51,952,677 |
| Genome sequence N90 (bp) | 51,952,677 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Others | Total | |
|---|---|---|---|---|---|---|
| Chromosome | 95,739 | 756 | 268 | 387 | 1,954 | 99,104 |
| Chloroplast | 81 | 29 | 6 | 0 | 0 | 116 |
| Mitochondrion | 49 | 28 | 2 | 0 | 0 | 79 |
| Others | 627 | 299 | 21 | 0 | 28 | 975 |
| Total | 96,496 | 1,112 | 297 | 387 | 1,982 | 100,274 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Others | Total |
|---|---|---|---|---|---|---|
| chr1 | 4,247 | 30 | 0 | 25 | 117 | 4,419 |
| chr10 | 5,249 | 34 | 0 | 28 | 113 | 5,424 |
| chr11 | 4,631 | 47 | 0 | 10 | 93 | 4,781 |
| chr12 | 4,229 | 39 | 0 | 15 | 91 | 4,374 |
| chr13 | 6,480 | 55 | 37 | 26 | 88 | 6,686 |
| chr14 | 4,042 | 25 | 0 | 16 | 98 | 4,181 |
| chr15 | 4,651 | 44 | 1 | 15 | 99 | 4,810 |
| chr16 | 3,617 | 23 | 1 | 8 | 69 | 3,718 |
| chr17 | 4,510 | 33 | 0 | 27 | 87 | 4,657 |
| chr18 | 5,162 | 42 | 2 | 22 | 110 | 5,338 |
| chr19 | 4,437 | 35 | 224 | 11 | 116 | 4,823 |
| chr2 | 5,380 | 57 | 0 | 32 | 91 | 5,560 |
| chr20 | 4,766 | 32 | 1 | 25 | 93 | 4,917 |
| chr3 | 4,331 | 40 | 0 | 12 | 111 | 4,494 |
| chr4 | 4,453 | 28 | 1 | 19 | 102 | 4,603 |
| chr5 | 4,317 | 38 | 1 | 15 | 106 | 4,477 |
| chr6 | 5,376 | 43 | 0 | 20 | 109 | 5,548 |
| chr7 | 4,762 | 28 | 0 | 13 | 62 | 4,865 |
| chr8 | 6,172 | 55 | 0 | 22 | 110 | 6,359 |
| chr9 | 4,927 | 28 | 0 | 26 | 89 | 5,070 |
| Chloroplast | 81 | 29 | 6 | 0 | 0 | 116 |
| Mitochondrion | 49 | 28 | 2 | 0 | 0 | 79 |
| Others | 627 | 299 | 21 | 0 | 28 | 975 |
| Total | 96,496 | 1,112 | 297 | 387 | 1,982 | 100,274 |