logo
Advanced

  • Glycine max
  • Gmax_ZH13_v2.0
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA000902
    Biosample
    SAMC044340
    Accession No.
    GWHAAEV00000000.1
    GWH reannotation accession
    -
    GSA raw reads
    CRR031672, CRR031683, CRR031673, CRR031684, CRR031681,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    The state key laboratory of plant cell and chromosome engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yanting Shen, shenyanting@gzucm.edu.cn
    Sequence author(s)
    Yanting Shen, Huilong Du, Yucheng Liu, Lingbin Ni, Chengzhi Liang, Zhixi Tian
    Released Date
    2019-09-16
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    Canu v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 120.0
    BioNano 639.0
    Illumina HiSeq 2500 45.0
    Hi-C 125.0
    Iso-Seq 8.93
    RNA-seq 353.0
    smRNA-seq 67.3
    Download
    DNA GFF RNA CDS Protein
    Reannotation Download
    -
    Publication(s)
    Yanting Shen, et al. Update soybean Zhonghuang 13 genome to a golden reference. SCIENCE CHINA Life Sciences. 2019.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHAAEV00000000 - Gmax_ZH13 Draft genome in chromosome level 2018-07-27 DNA GFF RNA CDS Protein
    GWHAAEV00000000.1 - Gmax_ZH13_v2.0 Draft genome in chromosome level 2019-09-16 DNA GFF RNA CDS Protein
    GWHAAEV00000000.2 - Gmax_ZH13_v2.0 Draft genome in chromosome level 2025-04-08 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,011,840,349
    GC content 35.02%
    Chromosomes sequence No. 20
    Organellas sequence No. 2
    Genome sequence No. 58
    Maximum genome sequence length (bp) 60,669,500
    Minimum genome sequence length (bp) 20,602
    Average genome sequence length (bp) 17,445,523
    Genome sequence N50 (bp) 51,952,677
    Genome sequence N90 (bp) 51,952,677
    Annotation of Whole Genome Assembly
    Protein tRNA rRNA ncRNA Others Total
    Chromosome 95,739 756 268 387 1,954 99,104
    Chloroplast 81 29 6 0 0 116
    Mitochondrion 49 28 2 0 0 79
    Others 627 299 21 0 28 975
    Total 96,496 1,112 297 387 1,982 100,274
    Annotation Details
    ChrID Protein tRNA rRNA ncRNA Others Total
    chr1 4,247 30 0 25 117 4,419
    chr10 5,249 34 0 28 113 5,424
    chr11 4,631 47 0 10 93 4,781
    chr12 4,229 39 0 15 91 4,374
    chr13 6,480 55 37 26 88 6,686
    chr14 4,042 25 0 16 98 4,181
    chr15 4,651 44 1 15 99 4,810
    chr16 3,617 23 1 8 69 3,718
    chr17 4,510 33 0 27 87 4,657
    chr18 5,162 42 2 22 110 5,338
    chr19 4,437 35 224 11 116 4,823
    chr2 5,380 57 0 32 91 5,560
    chr20 4,766 32 1 25 93 4,917
    chr3 4,331 40 0 12 111 4,494
    chr4 4,453 28 1 19 102 4,603
    chr5 4,317 38 1 15 106 4,477
    chr6 5,376 43 0 20 109 5,548
    chr7 4,762 28 0 13 62 4,865
    chr8 6,172 55 0 22 110 6,359
    chr9 4,927 28 0 26 89 5,070
    Chloroplast 81 29 6 0 0 116
    Mitochondrion 49 28 2 0 0 79
    Others 627 299 21 0 28 975
    Total 96,496 1,112 297 387 1,982 100,274