iDog houses 4 genomes for cannis includes Canfam4, Canfam3.1 and two assembly genomes that are dhole and wolf. For assembly genomes, iDog only load the scaffold which longer than 500kb and the according annotated data information.
1.1 Scaffold
When users open “Assembly Data” menu, a statistical web page for dhole and wolf appears. Click the number in “>500k”, a scaffold list will be opened. The field in the result table describes as follows.
#Gene: the number of genes annotated in the scaffold
#Aligned Reference Length (bp): the length of scaffold aligned to the reference
#Coverage: the ratio of aligned reference length to aligned reference chromosome length.
1.2 Gene
The #Gene links to the gene list of the specific scaffold.
The link of gene name is the detail information of gene. There are two formats to display one gene, the Custom and the GenBank format.
For custom format, the data information will mainly display as table. While for GenBank format, the data information arranges as different parts as NCBI GenBank.
The annotations for Gene including Ensembl Gene, SwissProt and Trembl are integrated and displayed here.
