Breed-specific Variants
The Dog10K variants are utilized to construct a comprehensive landscape of breed-specific genomic variations across dog breeds. SNPs with an allele frequency of ≥80% in one breed and ≤20% in all other breeds were identified as breed-specific, resulting in a total of 43,487 breed-specific variants for 145 breeds.
General Information
| Breed | |
| Chromosome | |
Location | start end |
Variant Type |
Annotate Information
Gene Name | (e.g. ENSCAFG00805001827) |
Annotated Gene Region | 3_prime_UTR_variant 5_prime_UTR_variant coding_sequence_variant downstream_gene_variant intergenic_variant intron_variant missense_variant non_coding_transcript_exon_variant non_coding_transcript_variant splice_acceptor_variant splice_donor_5th_base_variant splice_donor_region_variant splice_polypyrimidine_tract_variant splice_region_variant start_lost stop_gained stop_retained_variant synonymous_variant upstream_gene_variant |