Difference between revisions of "LncRNAWiki:Featured"

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|-
 
|-
 
!HOTTIP
 
!HOTTIP
−
![[NONHSAT119717]]
+
![[]]
 
!HOXA13as, HIT18844, NCRNA00213, ENSG00000243766
 
!HOXA13as, HIT18844, NCRNA00213, ENSG00000243766
 
!HOXA transcript at the distal tip
 
!HOXA transcript at the distal tip
 +
|-
 +
!Hoxa11as
 +
![[NONHSAT119704]]
 +
!Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990
 +
!HOXA11 antisense RNA
 +
|-
 +
!HOXA3as
 +
![[NONHSAT119676]]
 +
!HIT12844, HIT94153, HOXA-AS2, ENSG00000253552
 +
!N/A
 +
|-
 +
!HOXA6as
 +
![[lnc-EVX1-9:1]]
 +
!HIT16800
 +
!N/A
 +
|-
 +
!HULC
 +
![[NONHSAT107640]]
 +
!ENSG00000251164
 +
!hepatocellular carcinoma up-regulated long non-coding RNA
 +
|-
 +
!IPW
 +
![[NONHSAT041063]]
 +
!NCRNA00002
 +
!imprinted in Prader-Willi syndrome
 +
|-
 +
!Jpx
 +
![[lnc-ZCCHC13-1:1]]
 +
!Enox, NCRNA00183, ENSG00000225470
 +
!Enox (expressed neighbor of Xist)
 +
|-
 +
!Kcnq1ot1
 +
![[NONHSAT017524]]
 +
!LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821
 +
!Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
 +
|-
 +
!KRASP1
 +
![[NONHSAT113225]]
 +
!ENSG00000220635
 +
!KRAS Pseudogene 1
 +
|-
 +
!LINC00568
 +
![[ENST00000416894.1]]
 +
!Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1
 +
!focally amplified long non-coding RNA in epithelial cancer
 +
|-
 +
!lincRNA-RoR
 +
![[NONHSAT059436]]
 +
!lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609
 +
!long intergenic non-protein coding RNA, regulator of reprogramming
 +
|-
 +
!LOC100887755
 +
![[lnc-SNAI1-1:1]]
 +
!Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1
 +
!translation regulatory long non-coding RNA 1
 +
|-
 +
!LOC285194
 +
![[NONHSAT091315]]
 +
!LSAMP-AS3, ENSG00000243197,TUSC7
 +
!tumor suppressor candidate 7 (non-protein coding)
 +
!-
 +
!LUST
 +
![[NONHSAT089783]]
 +
!Je2, ENSG00000003756
 +
!LUCA-15-specific transcript.
 +
|-
 +
!Malat1
 +
![[ENST00000534336.1]]
 +
!Neat2, ENSG00000251562
 +
!Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
 +
|-
 +
!mascRNA
 +
![[lnc-SCYL1-1:5]]
 +
!Malat1
 +
!mascRNA (MALAT1-associated small cytoplasmic RNA)
 +
|-
 +
!MEG3
 +
![[NONHSAT039745]]
 +
!Gtl2, ENSG00000214548
 +
!maternally expressed 3 (non-protein coding)
 +
|-
 +
!ncR-uPAR
 +
![[NONHSAT102247]]
 +
!NCRUPAR, ENSG00000225407
 +
!non-protein coding RNA, upstream of F2R/PAR1
 +
|-
 +
!NDM29
 +
![[lnc-C11orf16-1:1]]
 +
!29A
 +
!neuroblastoma differentiation marker 29 ([http://www.ncbi.nlm.nih.gov/pubmed/20581224 Castelnuovo (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/17274687 Pagano (2007)]).
 +
|-
 +
!Nespas
 +
![[lnc-CTSZ-5:1]]
 +
!Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590
 +
!Nespas: neuroendocrine secretory protein (Nesp) antisense.
 +
|-
 +
!NRON
 +
![[NONHSAT134764]]
 +
!ENSG00000253079
 +
!non-protein coding RNA, repressor of NFAT
 +
|-
 +
!NTT
 +
![[NONHSAT115106]]
 +
!
 +
!noncoding transcript in T cells.
 +
|-
 +
!Otx2os1
 +
![[lnc-C14orf101-5:1]]
 +
!OTX2-AS1, ENSG00000248550
 +
!OTX2 opposite strand transcript 1
 +
|-
 +
!PANDA
 +
![[lnc-CDKN1A-1:1]]
 +
!P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR
 +
!promoter of CDKN1A antisense DNA damage activated RNA
 +
|-
 +
!PCGEM1
 +
![[NONHSAT076153]]
 +
!ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA
 +
!Prostate-specific transcript 1
 +
|-
 +
!PDZK1IP1-AS1
 +
![[ENST00000429328.2]]
 +
!Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853
 +
!long intergenic non-protein coding RNA 853
 +
|-
 +
!PRINS
 +
![[NONHSAT011777]]
 +
!ENSG00000238115
 +
!Psoriasis susceptibility-related RNA Gene Induced by Stress
 +
|-
 +
!PTENP1
 +
![[NONHSAT130775]]
 +
!PTENpg1, PTEN2, ENSG00000237984
 +
!PTEN Pseudogene 1
 +
|-
 +
!Rian
 +
![[ENST00000553584.1]]
 +
!Irm, MEG8 and Bsr, linc1458, ENSG00000258399
 +
!Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
 
|}
 
|}

Revision as of 09:28, 11 October 2014

lncRNAdb name Transcript ID Alias Description
21A NONHSAT128494 ncRNA 21A N/A
7SK NONHSAT113149 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 RNA, 7SK small nuclear
7SL lnc-LRR1-1:1 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 RNA, 7SL, cytoplasmic 1
AK023948 NONHSAT129210 N/A
BC200 lnc-EPCAM-1:2 BCYRN1,BC200a, NCRNA00004, LINC00004 BCYRN1, brain cytoplasmic RNA 1
CYP4A22-AS1 ENST00000444042.2 Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 CYP4A22 antisense RNA 1
cyrano ENST00000500949.2 LOC729082, linc-NUSAP1-1, OIP5-AS1 OIP5 antisense RNA 1
DHFR upstream transcripts NONHSAT102417 DHFR minor transcript 5'-UTR, ENSG00000228716
DISC2 NONHSAT010191 DISC1-AS1, DISC1OS, NCRNA00015 disrupted in schizophrenia 2 (non-protein coding)
EGO NONHSAT087635 EGOT, ENSG00000235947 Eosinophil granule ontogeny (EGO) RNA
Emx2os lnc-PDZD8-3:1 ENSG00000229847 Emx2 opposite strand transcript.
Evf2 lnc-DLX5-3:1 Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
GAS5 NONHSAT007663 SNHG2, ENSG00000234741
Gomafu lnc-CRYBA4-2:1 MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 MIAT: myocardial infarction associated transcript ((Ishii 2006)).
RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)).
H19 NONHSAT017465 Q96MK8,ENSG00000130600 H19, imprinted maternally expressed transcript (non-protein coding)
HAR1A lnc-BIRC7-2:1 HAR1F, ENSG00000238820 highly accelerated region 1A
HAR1B ENST00000447910.2 HAR1R, ENSG00000231133 highly accelerated region 1B
HOTAIR NONHSAT028508 Gm16258, Hox antisense intergenic RNA, ENSG00000228630 Hox antisense intergenic RNA
HOTAIRM1 lnc-EVX1-12:1 HIT06113, HIT92376, linc1548, ENSG00000233429 HOXA transcript antisense RNA, myeloid-specific 1
HOTTIP [[]] HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 HOXA transcript at the distal tip
Hoxa11as NONHSAT119704 Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 HOXA11 antisense RNA
HOXA3as NONHSAT119676 HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 N/A
HOXA6as lnc-EVX1-9:1 HIT16800 N/A
HULC NONHSAT107640 ENSG00000251164 hepatocellular carcinoma up-regulated long non-coding RNA
IPW NONHSAT041063 NCRNA00002 imprinted in Prader-Willi syndrome
Jpx lnc-ZCCHC13-1:1 Enox, NCRNA00183, ENSG00000225470 Enox (expressed neighbor of Xist)
Kcnq1ot1 NONHSAT017524 LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
KRASP1 NONHSAT113225 ENSG00000220635 KRAS Pseudogene 1
LINC00568 ENST00000416894.1 Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 focally amplified long non-coding RNA in epithelial cancer
lincRNA-RoR NONHSAT059436 lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 long intergenic non-protein coding RNA, regulator of reprogramming
LOC100887755 lnc-SNAI1-1:1 Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 translation regulatory long non-coding RNA 1
LOC285194 NONHSAT091315 LSAMP-AS3, ENSG00000243197,TUSC7 tumor suppressor candidate 7 (non-protein coding) - LUST NONHSAT089783 Je2, ENSG00000003756 LUCA-15-specific transcript.
Malat1 ENST00000534336.1 Neat2, ENSG00000251562 Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
mascRNA lnc-SCYL1-1:5 Malat1 mascRNA (MALAT1-associated small cytoplasmic RNA)
MEG3 NONHSAT039745 Gtl2, ENSG00000214548 maternally expressed 3 (non-protein coding)
ncR-uPAR NONHSAT102247 NCRUPAR, ENSG00000225407 non-protein coding RNA, upstream of F2R/PAR1
NDM29 lnc-C11orf16-1:1 29A neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)).
Nespas lnc-CTSZ-5:1 Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 Nespas: neuroendocrine secretory protein (Nesp) antisense.
NRON NONHSAT134764 ENSG00000253079 non-protein coding RNA, repressor of NFAT
NTT NONHSAT115106 noncoding transcript in T cells.
Otx2os1 lnc-C14orf101-5:1 OTX2-AS1, ENSG00000248550 OTX2 opposite strand transcript 1
PANDA lnc-CDKN1A-1:1 P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR promoter of CDKN1A antisense DNA damage activated RNA
PCGEM1 NONHSAT076153 ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA Prostate-specific transcript 1
PDZK1IP1-AS1 ENST00000429328.2 Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 long intergenic non-protein coding RNA 853
PRINS NONHSAT011777 ENSG00000238115 Psoriasis susceptibility-related RNA Gene Induced by Stress
PTENP1 NONHSAT130775 PTENpg1, PTEN2, ENSG00000237984 PTEN Pseudogene 1
Rian ENST00000553584.1 Irm, MEG8 and Bsr, linc1458, ENSG00000258399 Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
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