Difference between revisions of "LncRNAWiki:Featured"
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|N/A | |N/A | ||
|- | |- | ||
− | + | |7SK | |
− | + | |[[NONHSAT113149]] | |
− | + | |7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 | |
− | + | |RNA, 7SK small nuclear | |
|- | |- | ||
− | + | |7SL | |
− | + | |[[lnc-LRR1-1:1]] | |
− | + | |7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 | |
− | + | |RNA, 7SL, cytoplasmic 1 | |
|- | |- | ||
− | + | |AK023948 | |
− | + | |[[NONHSAT129210]] | |
− | + | | | |
− | + | |N/A | |
|- | |- | ||
− | + | |BC200 | |
− | + | |[[lnc-EPCAM-1:2]] | |
− | + | |BCYRN1,BC200a, NCRNA00004, LINC00004 | |
− | + | |BCYRN1, brain cytoplasmic RNA 1 | |
|- | |- | ||
− | + | |CYP4A22-AS1 | |
− | + | |[[ENST00000444042.2]] | |
− | + | |Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 | |
− | + | |CYP4A22 antisense RNA 1 | |
|- | |- | ||
− | + | |cyrano | |
− | + | |[[ENST00000500949.2]] | |
− | + | |LOC729082, linc-NUSAP1-1, OIP5-AS1 | |
− | + | |OIP5 antisense RNA 1 | |
|- | |- | ||
− | + | |DHFR upstream transcripts | |
− | + | |[[NONHSAT102417]] | |
− | + | | DHFR minor transcript 5'-UTR, ENSG00000228716 | |
− | + | | | |
|- | |- | ||
− | + | |DISC2 | |
− | + | |[[NONHSAT010191]] | |
− | + | |DISC1-AS1, DISC1OS, NCRNA00015 | |
− | + | |disrupted in schizophrenia 2 (non-protein coding) | |
|- | |- | ||
− | + | |EGO | |
− | + | |[[NONHSAT087635]] | |
− | + | |EGOT, ENSG00000235947 | |
− | + | |Eosinophil granule ontogeny (EGO) RNA | |
|- | |- | ||
− | + | |Emx2os | |
− | + | |[[lnc-PDZD8-3:1]] | |
− | + | |ENSG00000229847 | |
− | + | |Emx2 opposite strand transcript. | |
|- | |- | ||
− | + | |Evf2 | |
− | + | |[[lnc-DLX5-3:1]] | |
− | + | |Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764 | |
− | + | | | |
|- | |- | ||
− | + | |GAS5 | |
− | + | |[[NONHSAT007663]] | |
− | + | |SNHG2, ENSG00000234741 | |
− | + | | | |
|- | |- | ||
− | + | |Gomafu | |
− | + | |[[lnc-CRYBA4-2:1]] | |
− | + | |MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 | |
− | + | |MIAT: myocardial infarction associated transcript ([http://www.ncbi.nlm.nih.gov/pubmed/17066261 (Ishii 2006)]).<br>RNCR2: retinal noncoding RNA 2 ([http://www.ncbi.nlm.nih.gov/pubmed/15226823 (Blackshaw 2004)]). | |
|- | |- | ||
− | + | |H19 | |
− | + | |[[NONHSAT017465]] | |
− | + | |Q96MK8,ENSG00000130600 | |
− | + | |H19, imprinted maternally expressed transcript (non-protein coding) | |
|- | |- | ||
− | + | |HAR1A | |
− | + | |[[lnc-BIRC7-2:1]] | |
− | + | |HAR1F, ENSG00000238820 | |
− | + | |highly accelerated region 1A | |
|- | |- | ||
− | + | |HAR1B | |
− | + | |[[ENST00000447910.2]] | |
− | + | |HAR1R, ENSG00000231133 | |
− | + | |highly accelerated region 1B | |
|- | |- | ||
− | + | |HOTAIR | |
− | + | |[[NONHSAT028508]] | |
− | + | |Gm16258, Hox antisense intergenic RNA, ENSG00000228630 | |
− | + | |Hox antisense intergenic RNA | |
|- | |- | ||
− | + | |HOTAIRM1 | |
− | + | |[[lnc-EVX1-12:1]] | |
− | + | |HIT06113, HIT92376, linc1548, ENSG00000233429 | |
− | + | |HOXA transcript antisense RNA, myeloid-specific 1 | |
|- | |- | ||
− | + | |HOTTIP | |
− | + | |[[NONHSAT119717]] | |
− | + | |HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 | |
− | + | |HOXA transcript at the distal tip | |
|- | |- | ||
− | + | |Hoxa11as | |
− | + | |[[NONHSAT119704]] | |
− | + | |Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 | |
− | + | |HOXA11 antisense RNA | |
|- | |- | ||
− | + | |HOXA3as | |
− | + | |[[NONHSAT119676]] | |
− | + | |HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 | |
− | + | |N/A | |
|- | |- | ||
− | + | |HOXA6as | |
− | + | |[[lnc-EVX1-9:1]] | |
− | + | |HIT16800 | |
− | + | |N/A | |
|- | |- | ||
− | + | |HULC | |
− | + | |[[NONHSAT107640]] | |
− | + | |ENSG00000251164 | |
− | + | |hepatocellular carcinoma up-regulated long non-coding RNA | |
|- | |- | ||
− | + | |IPW | |
− | + | |[[NONHSAT041063]] | |
− | + | |NCRNA00002 | |
− | + | |imprinted in Prader-Willi syndrome | |
|- | |- | ||
− | + | |Jpx | |
− | + | |[[lnc-ZCCHC13-1:1]] | |
− | + | |Enox, NCRNA00183, ENSG00000225470 | |
− | + | |Enox (expressed neighbor of Xist) | |
|- | |- | ||
− | + | |Kcnq1ot1 | |
− | + | |[[NONHSAT017524]] | |
− | + | |LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 | |
− | + | |Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1 | |
|- | |- | ||
− | + | |KRASP1 | |
− | + | |[[NONHSAT113225]] | |
− | + | |ENSG00000220635 | |
− | + | |KRAS Pseudogene 1 | |
|- | |- | ||
− | + | |LINC00568 | |
− | + | |[[ENST00000416894.1]] | |
− | + | |Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 | |
− | + | |focally amplified long non-coding RNA in epithelial cancer | |
|- | |- | ||
− | + | |lincRNA-RoR | |
− | + | |[[NONHSAT059436]] | |
− | + | |lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 | |
− | + | |long intergenic non-protein coding RNA, regulator of reprogramming | |
|- | |- | ||
− | + | |LOC100887755 | |
− | + | |[[lnc-SNAI1-1:1]] | |
− | + | |Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 | |
− | + | |translation regulatory long non-coding RNA 1 | |
|- | |- | ||
− | + | |LOC285194 | |
− | + | |[[NONHSAT091315]] | |
− | + | |LSAMP-AS3, ENSG00000243197,TUSC7 | |
− | + | |tumor suppressor candidate 7 (non-protein coding) | |
|- | |- | ||
− | + | |LUST | |
− | + | |[[NONHSAT089783]] | |
− | + | |Je2, ENSG00000003756 | |
− | + | |LUCA-15-specific transcript. | |
|- | |- | ||
− | + | |Malat1 | |
− | + | |[[ENST00000534336.1]] | |
− | + | |Neat2, ENSG00000251562 | |
− | + | |Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript | |
|- | |- | ||
− | + | |mascRNA | |
− | + | |[[lnc-SCYL1-1:5]] | |
− | + | |Malat1 | |
− | + | |mascRNA (MALAT1-associated small cytoplasmic RNA) | |
|- | |- | ||
− | + | |MEG3 | |
− | + | |[[NONHSAT039745]] | |
− | + | |Gtl2, ENSG00000214548 | |
− | + | |maternally expressed 3 (non-protein coding) | |
|- | |- | ||
− | + | |ncR-uPAR | |
− | + | |[[NONHSAT102247]] | |
− | + | |NCRUPAR, ENSG00000225407 | |
− | + | |non-protein coding RNA, upstream of F2R/PAR1 | |
|- | |- | ||
− | + | |NDM29 | |
− | + | |[[lnc-C11orf16-1:1]] | |
− | + | |29A | |
− | + | |neuroblastoma differentiation marker 29 ([http://www.ncbi.nlm.nih.gov/pubmed/20581224 Castelnuovo (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/17274687 Pagano (2007)]). | |
|- | |- | ||
− | + | |Nespas | |
− | + | |[[lnc-CTSZ-5:1]] | |
− | + | |Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 | |
− | + | |Nespas: neuroendocrine secretory protein (Nesp) antisense. | |
|- | |- | ||
− | + | |NRON | |
− | + | |[[NONHSAT134764]] | |
− | + | |ENSG00000253079 | |
− | + | |non-protein coding RNA, repressor of NFAT | |
|- | |- | ||
− | + | |NTT | |
− | + | |[[NONHSAT115106]] | |
− | + | | | |
− | + | |noncoding transcript in T cells. | |
|- | |- | ||
− | + | |Otx2os1 | |
− | + | |[[lnc-C14orf101-5:1]] | |
− | + | |OTX2-AS1, ENSG00000248550 | |
− | + | |OTX2 opposite strand transcript 1 | |
|- | |- | ||
− | + | |PANDA | |
− | + | |[[lnc-CDKN1A-1:1]] | |
− | + | |P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR | |
− | + | |promoter of CDKN1A antisense DNA damage activated RNA | |
|- | |- | ||
− | + | |PCGEM1 | |
− | + | |[[NONHSAT076153]] | |
− | + | |ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA | |
− | + | |Prostate-specific transcript 1 | |
|- | |- | ||
− | + | |PDZK1IP1-AS1 | |
− | + | |[[ENST00000429328.2]] | |
− | + | |Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 | |
− | + | |long intergenic non-protein coding RNA 853 | |
|- | |- | ||
− | + | |PRINS | |
− | + | |[[NONHSAT011777]] | |
− | + | |ENSG00000238115 | |
− | + | |Psoriasis susceptibility-related RNA Gene Induced by Stress | |
|- | |- | ||
− | + | |PTENP1 | |
− | + | |[[NONHSAT130775]] | |
− | + | |PTENpg1, PTEN2, ENSG00000237984 | |
− | + | |PTEN Pseudogene 1 | |
|- | |- | ||
− | + | |Rian | |
− | + | |[[ENST00000553584.1]] | |
− | + | |Irm, MEG8 and Bsr, linc1458, ENSG00000258399 | |
− | + | |Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8 | |
|} | |} |
Revision as of 00:53, 13 October 2014
Name | Transcript ID | Alias | Description |
---|---|---|---|
21A | NONHSAT128494 | ncRNA 21A | N/A |
7SK | NONHSAT113149 | 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 | RNA, 7SK small nuclear |
7SL | lnc-LRR1-1:1 | 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 | RNA, 7SL, cytoplasmic 1 |
AK023948 | NONHSAT129210 | N/A | |
BC200 | lnc-EPCAM-1:2 | BCYRN1,BC200a, NCRNA00004, LINC00004 | BCYRN1, brain cytoplasmic RNA 1 |
CYP4A22-AS1 | ENST00000444042.2 | Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 | CYP4A22 antisense RNA 1 |
cyrano | ENST00000500949.2 | LOC729082, linc-NUSAP1-1, OIP5-AS1 | OIP5 antisense RNA 1 |
DHFR upstream transcripts | NONHSAT102417 | DHFR minor transcript 5'-UTR, ENSG00000228716 | |
DISC2 | NONHSAT010191 | DISC1-AS1, DISC1OS, NCRNA00015 | disrupted in schizophrenia 2 (non-protein coding) |
EGO | NONHSAT087635 | EGOT, ENSG00000235947 | Eosinophil granule ontogeny (EGO) RNA |
Emx2os | lnc-PDZD8-3:1 | ENSG00000229847 | Emx2 opposite strand transcript. |
Evf2 | lnc-DLX5-3:1 | Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764 | |
GAS5 | NONHSAT007663 | SNHG2, ENSG00000234741 | |
Gomafu | lnc-CRYBA4-2:1 | MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 | MIAT: myocardial infarction associated transcript ((Ishii 2006)). RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)). |
H19 | NONHSAT017465 | Q96MK8,ENSG00000130600 | H19, imprinted maternally expressed transcript (non-protein coding) |
HAR1A | lnc-BIRC7-2:1 | HAR1F, ENSG00000238820 | highly accelerated region 1A |
HAR1B | ENST00000447910.2 | HAR1R, ENSG00000231133 | highly accelerated region 1B |
HOTAIR | NONHSAT028508 | Gm16258, Hox antisense intergenic RNA, ENSG00000228630 | Hox antisense intergenic RNA |
HOTAIRM1 | lnc-EVX1-12:1 | HIT06113, HIT92376, linc1548, ENSG00000233429 | HOXA transcript antisense RNA, myeloid-specific 1 |
HOTTIP | NONHSAT119717 | HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 | HOXA transcript at the distal tip |
Hoxa11as | NONHSAT119704 | Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 | HOXA11 antisense RNA |
HOXA3as | NONHSAT119676 | HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 | N/A |
HOXA6as | lnc-EVX1-9:1 | HIT16800 | N/A |
HULC | NONHSAT107640 | ENSG00000251164 | hepatocellular carcinoma up-regulated long non-coding RNA |
IPW | NONHSAT041063 | NCRNA00002 | imprinted in Prader-Willi syndrome |
Jpx | lnc-ZCCHC13-1:1 | Enox, NCRNA00183, ENSG00000225470 | Enox (expressed neighbor of Xist) |
Kcnq1ot1 | NONHSAT017524 | LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 | Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1 |
KRASP1 | NONHSAT113225 | ENSG00000220635 | KRAS Pseudogene 1 |
LINC00568 | ENST00000416894.1 | Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 | focally amplified long non-coding RNA in epithelial cancer |
lincRNA-RoR | NONHSAT059436 | lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 | long intergenic non-protein coding RNA, regulator of reprogramming |
LOC100887755 | lnc-SNAI1-1:1 | Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 | translation regulatory long non-coding RNA 1 |
LOC285194 | NONHSAT091315 | LSAMP-AS3, ENSG00000243197,TUSC7 | tumor suppressor candidate 7 (non-protein coding) |
LUST | NONHSAT089783 | Je2, ENSG00000003756 | LUCA-15-specific transcript. |
Malat1 | ENST00000534336.1 | Neat2, ENSG00000251562 | Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript |
mascRNA | lnc-SCYL1-1:5 | Malat1 | mascRNA (MALAT1-associated small cytoplasmic RNA) |
MEG3 | NONHSAT039745 | Gtl2, ENSG00000214548 | maternally expressed 3 (non-protein coding) |
ncR-uPAR | NONHSAT102247 | NCRUPAR, ENSG00000225407 | non-protein coding RNA, upstream of F2R/PAR1 |
NDM29 | lnc-C11orf16-1:1 | 29A | neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)). |
Nespas | lnc-CTSZ-5:1 | Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 | Nespas: neuroendocrine secretory protein (Nesp) antisense. |
NRON | NONHSAT134764 | ENSG00000253079 | non-protein coding RNA, repressor of NFAT |
NTT | NONHSAT115106 | noncoding transcript in T cells. | |
Otx2os1 | lnc-C14orf101-5:1 | OTX2-AS1, ENSG00000248550 | OTX2 opposite strand transcript 1 |
PANDA | lnc-CDKN1A-1:1 | P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR | promoter of CDKN1A antisense DNA damage activated RNA |
PCGEM1 | NONHSAT076153 | ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA | Prostate-specific transcript 1 |
PDZK1IP1-AS1 | ENST00000429328.2 | Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 | long intergenic non-protein coding RNA 853 |
PRINS | NONHSAT011777 | ENSG00000238115 | Psoriasis susceptibility-related RNA Gene Induced by Stress |
PTENP1 | NONHSAT130775 | PTENpg1, PTEN2, ENSG00000237984 | PTEN Pseudogene 1 |
Rian | ENST00000553584.1 | Irm, MEG8 and Bsr, linc1458, ENSG00000258399 | Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8 |