Lipidomic data analysis: tutorial, practical guidelines and applications.

Antonio Checa, Carmen Bedia, Joaquim Jaumot
Author Information
  1. Antonio Checa: Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Scheeles väg 2, SE-171 77 Stockholm, Sweden.
  2. Carmen Bedia: Department of Environmental Chemistry, IDAEA-CSIC, Jordi Girona 18-26, Barcelona 08034, Spain.
  3. Joaquim Jaumot: Department of Environmental Chemistry, IDAEA-CSIC, Jordi Girona 18-26, Barcelona 08034, Spain. Electronic address: joaquim.jaumot@idaea.csic.es.

Abstract

lipids are a broad group of biomolecules involved in diverse critical biological roles such as cellular membrane structure, energy storage or cell signaling and homeostasis. Lipidomics is the -omics science that pursues the comprehensive characterization of lipids present in a biological sample. Different analytical strategies such as nuclear magnetic resonance or mass spectrometry with or without previous chromatographic separation are currently used to analyze the lipid composition of a sample. However, current analytical techniques provide a vast amount of data which complicates the interpretation of results without the use of advanced data analysis tools. The choice of the appropriate chemometric method is essential to extract valuable information from the crude data as well as to interpret the lipidomic results in the biological context studied. The present work summarizes the diverse methods of analysis than can be used to study lipidomic data, from statistical inference tests to more sophisticated multivariate analysis methods. In addition to the theoretical description of the methods, application of various methods to a particular lipidomic data set as well as literature examples are presented.

Keywords

MeSH Term

Analysis of Variance
Animals
Chromatography, Liquid
Cluster Analysis
Computational Biology
Discriminant Analysis
Humans
Least-Squares Analysis
Lipid Metabolism
Lipids
Machine Learning
Magnetic Resonance Spectroscopy
Mass Spectrometry
Principal Component Analysis

Chemicals

Lipids

Word Cloud

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