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2020;7 (1): 95.

The genome sequence of star fruit ().

Shasha Wu, Wei Sun, Zhichao Xu, Junwen Zhai, Xiaoping Li, Chengru Li, Diyang Zhang, Xiaoqian Wu, Liming Shen, Junhao Chen, Hui Ren, Xiaoyu Dai, Zhongwu Dai, Yamei Zhao, Lei Chen, Mengxia Cao, Xinyu Xie, Xuedie Liu, Donghui Peng, Jianwen Dong, Yu-Yun Hsiao, Shi-Lin Chen, Wen-Chieh Tsai, Siren Lan, Zhong-Jian Liu
Author Information
  1. Shasha Wu: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  2. Wei Sun: Institute of Chinese Materia Medica, Chinese Academy of China Medical Sciences, Beijing, 100700 China.
  3. Zhichao Xu: Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100193 China.
  4. Junwen Zhai: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  5. Xiaoping Li: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  6. Chengru Li: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  7. Diyang Zhang: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China. ORCID
  8. Xiaoqian Wu: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  9. Liming Shen: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  10. Junhao Chen: State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin'an, Hangzhou, 311300 China.
  11. Hui Ren: Horticulture Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007 China.
  12. Xiaoyu Dai: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  13. Zhongwu Dai: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  14. Yamei Zhao: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  15. Lei Chen: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  16. Mengxia Cao: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  17. Xinyu Xie: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  18. Xuedie Liu: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  19. Donghui Peng: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  20. Jianwen Dong: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  21. Yu-Yun Hsiao: Orchid Research and Development Center, National Cheng Kung University, Tainan, 701 China. ORCID
  22. Shi-Lin Chen: Institute of Chinese Materia Medica, Chinese Academy of China Medical Sciences, Beijing, 100700 China.
  23. Wen-Chieh Tsai: Orchid Research and Development Center, National Cheng Kung University, Tainan, 701 China.
  24. Siren Lan: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
  25. Zhong-Jian Liu: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
PMID: 32528707 DOI: 10.1038/s41438-020-0307-3

Abstract

Oxalidaceae is one of the most important plant families in horticulture, and its key commercially relevant genus, , has diverse growth habits and fruit types. Here, we describe the assembly of a high-quality chromosome-scale genome sequence for (star fruit). distribution analysis showed that underwent a whole-genome triplication event, i.e., the gamma event shared by most eudicots. Comparisons between and other angiosperms also permitted the generation of Oxalidaceae gene annotations. We identified unique gene families and analyzed gene family expansion and contraction. This analysis revealed significant changes in MADS-box gene family content, which might be related to the cauliflory of . In addition, we identified and analyzed a total of 204 nucleotide-binding site, leucine-rich repeat receptor (NLR) genes and 58 WRKY genes in the genome, which may be related to the defense response. Our results provide insights into the origin, evolution and diversification of star fruit.

Keywords

Evolution Evolutionary biology Genome

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GWH: GWHABKE00000000 (Averrhoa carambola)

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