SOP10 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

LOC_Os02g07050

Mitochondrion

atp6

368

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	35.25%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	50.83%	Medium	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

ccb6c

1083

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	62.34%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	74.36%	High	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

ccb6c

325

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	52.14%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	67.39%	High	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

ccb6c

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	35.99%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	48.76%	Medium	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

ccb6c

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	31.46%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	44.92%	Medium	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

cox3

114

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	48.59%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	36.48%	Low	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad2

1246, 1247

CDS

C-to-U

CCC=>CCU

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	52.58%, 45	Medium, Me	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	25.06%, 17	Low, Poor	Decreased,	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad2

1408

CDS

C-to-U

NA=>NA

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	39.05%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	15.33%	Poor	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad2

1409

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	24.02%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	7.08%	Poor	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad2

303

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	74.38%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	63.49%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad5

1665

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	48.48%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	62.15%	High	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad6

146

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	47.77%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	31.94%	Low	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

nad6

158

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	21.20%	Low	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	0.09%	Poor	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps13

287

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	82.07%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	71.37%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps2

775

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	64.66%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	50.59%	Medium	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps3

1286

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	9.92%	Poor	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	24.67%	Low	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps3

956

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	46.08%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	58.10%	Medium	Increased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

1013

CDS

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	81.46%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	61.22%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

290

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	92.00%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	81.93%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	87.42%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	75.60%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

858

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	42.96%	Medium	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	30.98%	Low	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

926

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	90.91%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	74.66%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

937

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	81.63%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	70.92%	High	Decreased	37880207

Oryza sativa

LOC_Os02g07050

Mitochondrion

rps4

962

CDS

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
9311	9311	Control	Control	No mutant	Normal	Seedling	12 DAP	STS-PCR-seq	86.77%	High	None	37880207
9311	sop10-2	NA	NA	NA	NA	Seedling	12 DAP	STS-PCR-seq	70.99%	High	Decreased	37880207

Editing Factor:	SOP10
Synonym:	NA
Description:	Mutations in SOP10 impair intron splicing of the nad4 and nad5 transcripts and decrease RNA editing efficiency of the nad2, nad6, and rps4 transcripts, resulting in deficiencies in mitochondrial complex I, thus decrease ROS generation and rescuing the albino phenotype; Mutation of SOP10 in indica rice varieties enhances cold tolerance with lower ROS levels
Protein Family:	PPR
Subclass:	E
Construct Structure:	PLS-E1-E2
Gene ID & Species:	LOC_Os02g07050 (Oryza sativa)
Edited Gene(s):	nad2 nad6 rps4 atp6 ccb6c nad5 rps3 cox3 rps2 rps13
Editing Type(s):	C-to-U (48)
Publication(s):	[1] A mitochondrial pentatricopeptide repeat protein enhances cold tolerance by modulating mitochondrial superoxide in rice., Nature communications, 2023. [PMID=37880207]

Plant Editosome Database
a curated database of RNA editosome in plants

Summary

Editing Details