Liriodendron tulipifera - Plant Editosome Database - BIG Data Center

Summary

Species: Liriodendron tulipifera
NCBI Taxonomy: 3415
Organelle:Chloroplast (NC_008326.1); Mitochondrion (NC_021152.1)
Edited Genes:17
Editing Events:50
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
ndhD2122281
122281
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
psbL268158-68274
68158-68274
CDS
CDS
-
-
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl16285138-85539
85138-85539
CDS
CDS
-
-
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl2888200-88630
159406-159837
89292-89682
158358-158747
88200-88630
159406-159837
89292-89682
158358-158747
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
+
-
+
-
+
-
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
NA
NA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA

( NA = Data Not Available )

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atp62235103-235909
235103-235909
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
atp92136650-136874
136650-136874
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
cox12328527-330110
328527-330110
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
nad110323328-323386
318321-318579
173058-173442
25867-25949
27369-27560
27369-27560
323328-323386
318321-318579
173058-173442
25867-25949
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
+
+
+
-
-
-
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
nad4L265104-65406
65104-65406
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rpl162511850-512284
511850-512284
CDS
CDS
-
-
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps1041315-1561
2400-2512
1315-1561
2400-2512
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps112391042-391557
391042-391557
CDS
CDS
-
-
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rps42536631-537701
536631-537701
CDS
CDS
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rrn52492108-492224
492108-492224
Exon
Exon
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
rrnS2489685-491771
489685-491771
Exon
Exon
+
+
mRNA
mRNA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
sdh425734-6138
5734-6138
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>TERM
NA=>TERM
trnI2115126-115206
115126-115206
Exon
Exon
-
-
tRNA
tRNA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)