PlantPan is a comprehensive database that encompasses pan-genome analysis results of 195 sub-species from 11 species. It provides five level of information including species, gene & gene clusters, genomic variations & corresponding groups, genome synteny & corresponding groups.

Example: e.g. Rice, Cold, AP2, Lipid metabolism, KIN

Database Content

Pan-Genome

694,191 Pan Gene Groups
9 Graph Pan-Genomes

Gene Resistance

30 Types, 455,748 Predicted Microbial/Disease Resistance Genes
124 Types, 606,123 Literature Validated Resistance Genes

KEGG Pathway

23 Types
1,612,112 Pathway Related Genes

Homologs Between Paired Species

Homologous Genes Among 11 Species
4,981,150 Genes With Homology in Other Species
369,390 Gene Groups With Homology in Other Species

Transcription Factor

58 Types
522,720 Transcription Factors

Genome Syntney

3,345,098 Genome Synteny Blocks
6,023,727 Genes Overlapping With Genome Synteny
529,104,507 Variations Overlapping With Genome Synteny
177,827 Genome Synteny Groups

Genomic Variations

Gene Copy Number Variations
526,973,370 Genomic Variations
5,969,199 Genes Overlapping With Variations
1,616,089 Structural Variation Groups

Featured Species

Arabidopsis Thaliana

8 Genomes

Brassica Napus

5 Genomes

Brassica Rapa

13 Genomes

Maize

26 Genomes

Potato

8 Genomes

Rice

32 Genomes

Soybean

29 Genomes

Strawberry

5 Genomes

Tomato

46 Genomes

Sorghum

12 Genomes

Raphanus Sativus

11 Genomes

Sugarcane

7 Genomes

Citation

Please cite: "PlantPan: A comprehensive multi-species plant pan-genome database. The Plant Journal, 2025. doi:10.1111/tpj.70144. [PMID=40219973]"