Welcome to TCOD!
TCOD, is a comprehensive multi-omics data platform for tropical crops, provides data service for selective breeding and trait improvement research of tropical crops. It serves as a valuable resource by integrating a wide range of data, including genes, genomes, variants, expressions, and cultivars. In addition, TCOD provides a series of online tools for data mining and visualization to facilitate cross-species investigations.
Manihot esculenta
Hevea brasiliensis
Saccharum officinarum
Mangifera indica
Ananas comosus
Areca catechu
Musa acuminata
Theobroma cacao
Coffea canephora
Cocos nucifera
Litchi chinensis
Dimocarpus longan
Elaeis guineensis
Piper nigrum
Vanillal planifolia
TCOD is developed and maintained by National Genomics Data Center (NGDC), Beijing Institute of Genomics (BIG), Chinese Academy of Sciences and China National Center for Bioinformation (CNCB). The genome sequence and variations of cassava are provided by Institute of Tropical Biosciences and Biotechnology, Chinese Academy of Tropical Agricultural Sciences (ITBB-CATAS) and Hainan University (HNU). And the genome sequence and variations of rubber tree are provided by Rubber Research Institute, Chinese Academy of Tropical Agricultural Science (RRI-CATAS).
Licenses TCOD is free for academic use only. For any commercial use, please contact us for commercial licensing terms.
For questions, problems or suggestions, please contacts us via email at tcod@big.ac.cn.
TCOD: an integrated resource for tropical crops. Nucleic Acids Res 2023. [PMID=37843152]
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- The TCOD database is online on April 1, 2022
- The newly developed "Expression" module and expression profiles for five species were added on December 30, 2022.
- Genome assemblies for 10 species were added on March 10, 2023.
- Gene entries for 10 species were added, and gene annotations and homologous genes were updated on March 30, 2023.
- The Primer Design tool was added on April 11, 2023.
- Variation data for 6 species was added on April 21, 2023.
- The GO Enrichment tool and the KEGG Enrichment tool were added on May 5, 2023.
- Expression data for 8 species was added on May 12, 2023.
- Datasets for the BLAST and Genome Browser tools were updated on May 26, 2023.
- Cultivar data for 14 species was added on June 1, 2023.
- The Synteny Viewer tool was added on June 9, 2023.
- Downloadable data resources were updated on June 16, 2023.
- The genome sequence for the rubber tree (reyan8-79) and its corresponding annotation files have been released and are available for download on December 20, 2023.
- The VCF files containing genome variation data for 336 rubber tree samples have been released and are available for download on January 31, 2024.
Since Mar 29, 2022