TCOD eachassembly

Organism name: Saccharum spontaneum

Cultivar: AP85-441

Bioproject: PRJNA483885

Submitter: Fujian Agriculture and Forestry University

Year: 2018

Assembly level: Chromosome

Sequencing technology Illumina; PacBio RSII

Genome coverage 90x

Total sequence length: 3,133,290,353 bp

chromosomes and scaffolds: 32 chromosomes and 15271 scaffolds

Scaffold N50: 91,359,291 bp

median GC content(%): 44.92

Zhang J, Zhang X, Tang H, et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L [published correction appears in Nat Genet. 2018 Dec;50(12):1754]. Nat Genet. 2018;50(11):1565-1573. doi:10.1038/s41588-018-0237-2 [OpenLBID: OLB-PM-30297971]

Chrom	Size(Mb)	GC%	Gene
Chr1A	114.47395200000001	44.9274	3,868
Chr1B	123.26884299999999	44.9878	3,906
Chr1C	98.83445900000001	45.0152	3,173
Chr1D	116.84786	45.1121	4,165
Chr2A	121.903222	44.7588	3,692
Chr2B	114.05893499999999	44.7347	3,317
Chr2C	126.636275	44.7661	3,561
Chr2D	109.189819	44.7443	3,158
Chr3A	78.354946	45.0834	2,830
Chr3B	100.83578	44.9428	2,927
Chr3C	95.71609600000001	45.1778	3,240
Chr3D	61.676436	45.3148	2,191
Chr4A	75.14931299999999	44.9457	2,313
Chr4B	77.079522	44.8085	2,256
Chr4C	80.928851	44.9044	2,229
Chr4D	82.65343700000001	44.8833	2,390
Chr5A	91.4456	44.7024	2,463
Chr5B	92.524012	44.5879	2,244
Chr5C	89.762077	44.6422	2,303
Chr5D	84.92629799999999	44.7887	2,491
Chr6A	105.899069	44.2935	2,183
Chr6B	90.128929	44.3704	2,148
Chr6C	92.112115	44.4456	2,012
Chr6D	91.359291	44.3359	2,094
Chr7A	79.322609	44.6172	2,469
Chr7B	81.286239	44.5204	2,394
Chr7C	85.73558	44.4946	2,090
Chr7D	84.617075	44.5803	2,308
Chr8A	67.761837	44.7546	2,011
Chr8B	65.01826	44.7052	1,990
Chr8C	53.761610999999995	44.8363	1,471
Chr8D	66.972488	44.8298	1,939
Unplace	233.04951699999998	45.2623	-

Detail information of sugarcane_AP85-441