1. TCOD
  2. Assembly
  3. cacao_Matina1-6

Detail information of cacao_Matina1-6

Organism name:   Theobroma cacao

Cultivar:   Matina 1-6

Bioproject:   PRJNA51633

Submitter:   Cacao genome consortium

Year:   2011

Assembly level:   Chromosome

Sequencing technology   454; Illumina; Sanger

Genome coverage   15.58x

Total sequence length:   345,993,675 bp

chromosomes and scaffolds:   10 chromosomes and 701 scaffolds

Scaffold N50:   34,397,752 bp

median GC content(%):   32.52

Motamayor JC, Mockaitis K, Schmutz J, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol. 2013;14(6):r53. Published 2013 Jun 3. doi:10.1186/gb-2013-14-6-r53 [OpenLBID: OLB-PM-23731509]

Chrom Size(Mb) GC% Gene
Chr1 38.988864 33.2884 4,093
Chr2 42.436413 33.212 3,624
Chr3 34.397752 33.1167 3,181
Chr4 33.492547 32.9952 3,128
Chr5 40.442896 32.9566 3,280
Chr6 27.290986 32.737 2,355
Chr7 24.37947 32.7574 1,872
Chr8 21.543242 32.9005 2,030
Chr9 42.035188000000005 32.7917 3,571
Chr10 25.448839 32.6764 1,859
Unplace 15.537477999999998 22.8489 241

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