1. TCOD
  2. Assembly
  3. coffea_arabica

Detail information of coffea_arabica

Organism name:   Coffea arabica

Cultivar:   CCC135-36

Bioproject:   PRJNA506972

Submitter:   Johns Hopkins University

Year:   2018

Assembly level:   Chromosome

Sequencing technology   Illumina HiSeq; PacBio RSII; 10x GemCode

Genome coverage   160.0x

Total sequence length:   1,094,446,607 bp

chromosomes and scaffolds:   22 chromosomes and 2811 scaffolds

Scaffold N50:   42,465,768 bp

median GC content(%):   36.86

Chrom Size(Mb) GC% Gene
Chr1c 50.636588 36.6624 2,647
Chr1e 48.75697 36.7665 2,811
Chr2c 66.15535000000001 36.3704 4,480
Chr2e 71.633312 36.6609 4,709
Chr3c 41.566753 36.3011 2,255
Chr3e 37.271464 36.3817 1,953
Chr4c 41.786336000000006 36.7309 1,973
Chr4e 42.507428999999995 36.7672 2,325
Chr5e 39.439614999999996 36.8515 2,013
Chr5c 45.899693 36.7694 2,225
Chr6c 55.181588000000005 36.6113 2,904
Chr6e 52.240725 36.7615 2,927
Chr7c 38.854053 36.5635 2,420
Chr7e 35.392230000000005 36.3726 2,114
Chr8e 45.117557 36.5895 2,333
Chr8c 39.008463000000006 36.2113 2,174
Chr9c 38.064651 36.8752 1,456
Chr9e 35.839895 37.0433 1,472
Chr10e 40.458934 36.6402 2,104
Chr10c 45.429025 36.7188 1,936
Chr11c 36.215491 36.425 2,002
Chr11e 42.465768 36.7611 2,026
chloroplast 0.155189 37.4311 140
Unplace 104.369528 39.1085 3,503

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