Detail information of vanilla_CR00040_haplotypeA

Organism name:   Vanilla planifolia

Cultivar:   CR00040

Bioproject:   PRJNA753216

Submitter:   CIRAD

Year:   2022

Assembly level:   Chromosome

Sequencing technology   PacBio Sequel II

Genome coverage   288x

Total sequence length:   1,416,741,620 bp

chromosomes and scaffolds:   14 chromosomes and 1 scaffolds

Scaffold N50:   876,467,686 bp

median GC content(%):   30.35

Piet Q, Droc G, Marande W, et al. A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly. Plant Commun. 2022;3(5):100330. doi:10.1016/j.xplc.2022.100330 [OpenLBID: OLB-PM-35617961]

Chrom Size(Mb) GC% Gene
Chr01 73.495092 30.4352 3,532
Chr02 42.591792 30.8667 1,426
Chr03 41.867667000000004 31.0351 1,341
Chr04 36.435613 30.2247 1,179
Chr05 44.518491999999995 31.2312 1,907
Chr06 42.387411 30.464 1,346
Chr07 39.337659 30.1345 1,455
Chr08 31.377353 30.8372 1,229
Chr09 33.505165 30.9928 1,336
Chr10 32.65306 30.723 1,240
Chr11 47.220675 21.0529 1,228
Chr12 32.78129 31.3559 1,276
Chr13 22.012421999999997 30.831 1,007
Chr14 20.090242999999997 26.3363 695
Unplace 876.467686 30.7411 6,195

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