1. TCOD
  2. Assembly
  3. mango_Hongxiangya

Detail information of mango_Hongxiangya

Organism name:   Mangifera indica

Cultivar:   Hongxiangya

Bioproject:   PRJCA002248

Submitter:   South China Agricultural University

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Illumina Hiseq;PacBio Sequel II

Genome coverage   300x

Total sequence length:   371,620,806 bp

chromosomes and scaffolds:   20 chromosomes and 8 scaffolds

Scaffold N50:   18,777,690 bp

median GC content(%):   32.61

Wei Li, et al. SMRT sequencing generates the chromosome-scale reference genome of tropical fruit mango, Mangifera indica. bioRxiv. 2020.

Chrom Size(Mb) GC% Gene
chr1 17.272295 32.4377 1,527
chr2 19.959718000000002 32.3826 1,809
chr3 18.77769 32.5453 1,854
chr4 22.014470000000003 32.8958 2,304
chr5 18.043982 32.5003 1,640
chr6 13.93489 32.3869 1,114
chr7 16.887665000000002 32.5362 1,364
chr8 20.966627 32.6001 1,858
chr9 22.271002 32.675 2,245
chr10 12.445407999999999 32.483 976
chr11 23.906800999999998 33.1879 2,357
chr12 15.001369 32.7066 1,476
chr13 18.750349 32.5458 1,712
chr14 13.865489 32.7679 1,200
chr15 13.631091 32.7873 1,498
chr16 19.594037 33.1205 2,174
chr17 11.943369 32.2643 1,012
chr18 21.874139 32.3444 1,905
chr19 27.760119 32.5372 2,573
chr20 18.154432 32.3025 1,564
Unplace 4.5658639999999995 32.186 360

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