About Variants
iDog houses the variation information of dog/wolf genomes. It was designed and constructed as a SNPs detector and visualization tool to provide the research community a useful resource for the study of dog's population, evolution, phenotype and life habit.
In the current version, DogSD contains 71 millions non-redundant SNPs called from 722 individual samples and 6 millions ancient SNPs called from 27 individual samples.
Current Dataset
| Dataset | Data type | #Individuals | #Unique SNP | #SNP affected AA changed | BioProject | Load date |
|---|---|---|---|---|---|---|
| Dataset1 | DNA | 78 | 19,333,098 | - | - | 2014-06-01 |
| Dataset2 | DNA | 127 | 42,871,184 | 325,982 | PRJCA000282 | 2018-06-01 |
| Dataset3 | DNA | 722 | 71,050,194 | 947,203 | PRJNA448733 | 2021-05-25 |
| Dataset4 | Ancient DNA | 27 | 6,544,496 | 40,061 | PRJEB38079 | 2021-05-25 |
Tools
Download
The BAM,Fastq and VCF files can be accessed via FTP
Tutorials
Data provider
The VCF,Fastq,BAM data provided by Yaping Zhang's Lab in Kunming Institute of Zoology (KIZ), Chinese Academic of Sciences (CAS).