Download data
4.vcf file
Note: The following list provides the download links for several individual samples. Although it can be downloaded directly, we do not recommend you to do this because of large data size. You can download the data by following instructions:
Under linux environment: use wget command
such as wget -r ftp://download.big.ac.cn/idog/dogsd/vcf/Filtred_Published.vcf.bz2
Under windows environment: use FTP tool(FileZilla)
host: download.big.ac.cn username: anonymous password: anonymous
If you connect successfully, then change to the path dogsd.
Under linux environment: use wget command
such as wget -r ftp://download.big.ac.cn/idog/dogsd/vcf/Filtred_Published.vcf.bz2
Under windows environment: use FTP tool(FileZilla)
host: download.big.ac.cn username: anonymous password: anonymous
If you connect successfully, then change to the path dogsd.
1.VCF files for 1,929 samples from Dog10K (CanFam4).
| SNPs File name | MD5 | INDELs File name | MD5 |
|---|---|---|---|
| all_SNP.vcf.gz FTP HTTP (~218GB) | c5923ccc6ba86767ad9b801d69f0c5bb | AutoAndXPAR.nonSNPs.filter.vcf.gz FTP HTTP (~207GB) | d18ba2f21f6feabb07b9ab39ec1acf2d |
| all_SNP.vcf.gz.tbi FTP HTTP | a448734d4c3586ea8d6a3d9503629a02 | AutoAndXPAR.nonSNPs.filter.vcf.gz.tbi FTP HTTP | 71bf90af7178f9cb6535768c47beff87 |
| SNPs VCF file splitted for each chromosome | INDELs VCF file splitted for each chromosome | ||
| chr1.vcf.gz FTP HTTP | a4e20c1786da93c07ef11def69506f4c | chr1_indel.vcf.gz FTP HTTP | e79a49375326758a4c83416cbe27d4fe |
| chr2.vcf.gz FTP HTTP | 1c2d18abde43b6aa3d92702efae2ccb7 | chr2_indel.vcf.gz FTP HTTP | a322c4d5b740ea251aefa6803d03dc09 |
| chr3.vcf.gz FTP HTTP | e1a7b233a0fe2c2c1c2d484cc998094d | chr3_indel.vcf.gz FTP HTTP | cbfe7815134b9ffd8b9bcd20de17272e |
| chr4.vcf.gz FTP HTTP | f2d78c082ece635f2eb39b0b42b6b987 | chr4_indel.vcf.gz FTP HTTP | 4501ff55f69d9c10d503f00d2bd0e04b |
| chr5.vcf.gz FTP HTTP | f87a0068e9b75575bbe056d206fc7242 | chr5_indel.vcf.gz FTP HTTP | e0bd27608046350944a3cea3cabae0f8 |
| chr6.vcf.gz FTP HTTP | 7cadf23268f30976f2216fe00477b0ad | chr6_indel.vcf.gz FTP HTTP | dd5a6b0710e2f0c63674503a76961697 |
| chr7.vcf.gz FTP HTTP | 731a2e9aee06456a3f7ed87b44952dd1 | chr7_indel.vcf.gz FTP HTTP | 2b58d037c48f52aa56f7f148d8105a08 |
| chr8.vcf.gz FTP HTTP | b2202c8a7633b07911490974dda8c961 | chr8_indel.vcf.gz FTP HTTP | 7107d62660f601b151ed1699403e800a |
| chr9.vcf.gz FTP HTTP | a4c7512502b9f2dbf9873fd4c3c55a71 | chr9_indel.vcf.gz FTP HTTP | a28a1113da0b837df7c5bcb06cf65e19 |
| chr10.vcf.gz FTP HTTP | 20aa02ad92d7cbaffb29037f8ba4b780 | chr10_indel.vcf.gz FTP HTTP | c2fd6becaa03a646733abc8be2dd3134 |
| chr11.vcf.gz FTP HTTP | e4e7c9e40cdf79d472bca67a21e6f44c | chr11_indel.vcf.gz FTP HTTP | a9baa8a26826ae7473a93d6841e0756f |
| chr12.vcf.gz FTP HTTP | 8ba88603297db1d9b25322b73faa68ef | chr12_indel.vcf.gz FTP HTTP | 42eca81210ddc7a6d3d36487d4549d17 |
| chr13.vcf.gz FTP HTTP | 45e2b1312a7dbb2f7f938b59526e8205 | chr13_indel.vcf.gz FTP HTTP | ed803beef61ae6b6e200aa72e949f43b |
| chr14.vcf.gz FTP HTTP | 7f3096cb566682e521a653740145bf89 | chr14_indel.vcf.gz FTP HTTP | 191c7520d3fbf23eaac1c0d9e75371a6 |
| chr15.vcf.gz FTP HTTP | 8c73e7dadbf16539f94e5bf55c757e40 | chr15_indel.vcf.gz FTP HTTP | 8cdc91adb9456ffb924322fef5221beb |
| chr16.vcf.gz FTP HTTP | 5c00387751a3ea4ffe9f34af23c19d12 | chr16_indel.vcf.gz FTP HTTP | e5891aa385f20e7d4970090bda657e9f |
| chr17.vcf.gz FTP HTTP | b50782bbfa7d5620cccbca770db1df27 | chr17_indel.vcf.gz FTP HTTP | 065fd1eec423eb9868d014d2a1a7c37d |
| chr18.vcf.gz FTP HTTP | 469a15903b9e996dc19b0a4c67110784 | chr18_indel.vcf.gz FTP HTTP | 3e972b69a767c522541498bcfe7e503f |
| chr19.vcf.gz FTP HTTP | ef7f707b29eb29dd442369d97a7fc046 | chr19_indel.vcf.gz FTP HTTP | 2fc41e91166c8a69edd7835cd23777d8 |
| chr20.vcf.gz FTP HTTP | 03d160ada38e7b4db7bec96cf8e2ab37 | chr20_indel.vcf.gz FTP HTTP | 5df9264b09f5b96c44c06a94c5af3a40 |
| chr21.vcf.gz FTP HTTP | 07c2f7aa1fbc01b085b10c3b9c760adf | chr21_indel.vcf.gz FTP HTTP | 2847a31a82d2342c324e7fe84748e804 |
| chr22.vcf.gz FTP HTTP | ef2e34a604bf84f74b68be5899554acc | chr22_indel.vcf.gz FTP HTTP | c2f8326e14e62117291e209d1396e5de |
| chr23.vcf.gz FTP HTTP | 0b2c7351658aa2020ffcec8179e48ed0 | chr23_indel.vcf.gz FTP HTTP | 945a1307e90ba2b6a8e012afefeccc16 |
| chr24.vcf.gz FTP HTTP | 709bf766d8ed8863b3cc3261d52fc1a2 | chr24_indel.vcf.gz FTP HTTP | 1d26052d4fd976fc9434afdd03a59aa4 |
| chr25.vcf.gz FTP HTTP | 48a8f61aa9a54cf8150090f9f4889fce | chr25_indel.vcf.gz FTP HTTP | 796c2d66f41b45545a59d614b8d66518 |
| chr26.vcf.gz FTP HTTP | 4826aa7121f53475aca57a9e51397627 | chr26_indel.vcf.gz FTP HTTP | 2456ad3f471e73843fe39346c165d3cb |
| chr27.vcf.gz FTP HTTP | ffc597733402fe86b3a4390fecb42454 | chr27_indel.vcf.gz FTP HTTP | 46457060d01618e36c9039ce9eee9e6b |
| chr28.vcf.gz FTP HTTP | 05151a2de31937b6023d51b0557e8053 | chr28_indel.vcf.gz FTP HTTP | 6be38e8b1c62f13eaba7bed20ecb5d2d |
| chr29.vcf.gz FTP HTTP | 08e813009f2d30473390fca00c106ac8 | chr29_indel.vcf.gz FTP HTTP | 7256b0870d2a2d7785ea4b630c74c9b4 |
| chr30.vcf.gz FTP HTTP | b2eea4934a82329d5e0636976af40988 | chr30_indel.vcf.gz FTP HTTP | 76c3a92c0e6eaf1dcdd28acb564335aa |
| chr31.vcf.gz FTP HTTP | 37dda8d9fc819a9769085da8430e0709 | chr31_indel.vcf.gz FTP HTTP | 5504c8c87c47739247005294ce9f06c4 |
| chr32.vcf.gz FTP HTTP | 11b5dc2cd052134251ce95b5d3a191f0 | chr32_indel.vcf.gz FTP HTTP | 341d2b65d2d76bec632d82400b4c469d |
| chr33.vcf.gz FTP HTTP | a128dde810a3fa3ffba3305f31d105aa | chr33_indel.vcf.gz FTP HTTP | 4c0c165c66c8029e725fbed010cae199 |
| chr34.vcf.gz FTP HTTP | 7c8bf1be98c92c1499d68bc656cf5c57 | chr34_indel.vcf.gz FTP HTTP | 34dddcc64d61b5af57c8fd85954ca0eb |
| chr35.vcf.gz FTP HTTP | b54837e3bc47dfd10407f2a69db4bbeb | chr35_indel.vcf.gz FTP HTTP | b3a674a1c08086a642fee9e18a90f6cf |
| chr36.vcf.gz FTP HTTP | e735331b6c7d591d599605144d178f5f | chr36_indel.vcf.gz FTP HTTP | b72381fa4fdfb5c40345631d0834a0d7 |
| chr37.vcf.gz FTP HTTP | f26b6750b96f79b356f51f61c27182fa | chr37_indel.vcf.gz FTP HTTP | 733362c667f21c339565e17fa6792c25 |
| chr38.vcf.gz FTP HTTP | 771ab5658444e509e8bdf537a302d791 | chr38_indel.vcf.gz FTP HTTP | d0bc034dcd59ade15b886b3ea6f61a56 |
| chrX.NONPAR.SNPs.vqsr99.vcf.gz FTP HTTP | 2183d51d361f8c489416fec97b754624 | chrX_indel.vcf.gz FTP HTTP | 938547ffc02a958f58ea9285988db4cb |
2.VCF files for CanFam3.1.
| File name | MD5 |
|---|---|
| Filtred_Published.vcf.bz2 FTP HTTP (127 samples) | 82b87aaccfca0d0f8f315dfa300cad33 |
| SRZ189891_722g.990.SNP.INDEL.chrAll.vcf.gz FTP HTTP (722 samples) | 79320e152a583cc0a36d3ecb94da20f2 |