Plant Editosome Database
a curated database of RNA editosome in plants

IPI1 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: IPI1
Synonym: ISE2 PROTEIN INTERACTOR1, NbIPI1
Description: NbIPI1 is necessary for the accumulation of chloroplast rRNA species
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-DYW
Gene ID & Species: NA (Nicotiana benthamiana)
Edited Gene(s): atpA    atpF    ndhA    ndhB    ndhD    ndhG    petB    rpl20    rpoB    rpoC2    rps2    rpoA
Editing Type(s): C-to-U (24)
Publication(s): [1] The dicot homolog of maize PPR103 carries a C-terminal DYW domain and is required for C-to-U editing of chloroplast RNA transcripts., Research square, 2023. [PMID=36865278]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Nicotiana benthamiana NA Chloroplast atpA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast atpF NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhB NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhD NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhG NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast petB NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpl20 NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpoA NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANAIncreased36865278
Nicotiana benthamiana NA Chloroplast rpoB NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpoC2 NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rps2 NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Last update: Jul 2021 (version 1.0)