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IPI1 - Plant Editosome Database - CNCB-NGDC
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Summary

Editing Factor: IPI1
Synonym: ISE2 PROTEIN INTERACTOR1, NbIPI1
Description: NbIPI1 is necessary for the accumulation of chloroplast rRNA species
Protein Family: PPR
Subclass: DYW
Physical Interaction: ISE2
Construct Structure: PLS-DYW
Gene ID & Species: NA (Nicotiana benthamiana)
Edited Gene(s): atpA    atpF    ndhA    ndhB    ndhD    ndhG    petB    rpl20    rpoB    rpoC2    rps2    rpoA
Editing Type(s): C-to-U (24)
Publication(s): [1] The dicot homolog of maize PPR103 carries a C-terminal DYW domain and is required for C-to-U editing of chloroplast RNA transcripts., Research square, 2023. [PMID=36865278]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Nicotiana benthamiana NA Chloroplast atpA NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast atpF NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhA NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhB NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhD NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast ndhG NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast petB NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpl20 NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpoA NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANAIncreased36865278
Nicotiana benthamiana NA Chloroplast rpoB NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rpoC2 NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Nicotiana benthamiana NA Chloroplast rps2 NA NA http://benthgenome.qut.edu.au/ http://benthgenome.qut.edu.au/ NA NA C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NATRV-WTTRV-infected and non-silenced controlsNANo mutantChloroplasts in young sink leaves with forming thylakoids and granaLeaf6 weeksSanger sequencingNANANone36865278
NATRV-IPI1Tobacco rattle virus (TRV)-mediated VIGSNAKnockdownA severe chlorotic phenotype and TEM analysis reveals defective chloroplastsLeaf6 weeksSanger sequencingNANADecreased36865278
Last update: Feb 2026 (version 2.0)