atpF - Plant Editosome Database - BIG Data Center

Summary

Gene: atpF
Function: ATP synthase
Species: 59
Editing Factors:12 (AEF1, DYW2, MEF37, MORF2, MORF9, NUWA, ORRM1, ORRM1,ORRM6, ORRM6, OTP90, PGN, YL)
Editing Types:
C-to-U (70)
U-to-C (4)
Editing Events: 165 (NA: 91   C-to-U: 70   U-to-C: 4)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast2
NA: 2
11349-11758
12469-12613
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast3
C-to-U: 1
NA: 2
11790-12199
12896-13040
13039
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast10
C-to-U: 6
U-to-C: 4
17334
17336
17407
17466
17736
17929
18277
18297
18479
18531
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
U-to-C
CCU=>CUU
UCU=>UUU
UAG=>UAC
AAU=>AAC
UAG=>UAU
UCA=>UUA
CUU=>UUU
UAA=>CAA
UAG=>UAU
UAU=>UAC
P=>L
S=>F
TERM=>Y
N=>N
TERM=>Y
S=>L
L=>F
TERM=>Q
TERM=>Y
Y=>Y
Apopellia endiviifoliaChloroplast1
C-to-U: 1
19168CDS+C-to-UCCA=>CUAP=>L
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
12563NA+C-to-UNA=>NANA=>NA
Arabidopsis thalianaChloroplast2
C-to-U: 2
11992CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
Asplenium pekinenseChloroplast3
C-to-U: 1
NA: 2
11598-12007
12696-12840
12839
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast3
C-to-U: 1
NA: 2
11335-11744
12456-12600
12599
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast3
C-to-U: 1
NA: 2
11696-12105
12809-12953
12952
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast3
C-to-U: 1
NA: 2
11720-12129
12863-13007
13006
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast3
C-to-U: 1
NA: 2
11722-12131
12832-12976
12975
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast3
C-to-U: 1
NA: 2
11720-12129
12834-12978
12977
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
NA: 2
11724-12133
12844-12988
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast3
C-to-U: 1
NA: 2
11742-12151
12843-12987
12986
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast2
C-to-U: 2
12523CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
Cuscuta reflexaChloroplast1
C-to-U: 1
8925CDS-C-to-UCCA=>CUAP=>L
Cypripedium macranthosChloroplast1
C-to-U: 1
11999CDS-C-to-UCCA=>CUAP=>L
Cystopteris chinensisChloroplast3
C-to-U: 1
NA: 2
11743-12152
12863-13007
13006
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast1
C-to-U: 1
12640CDS-C-to-UCCA=>CUAP=>L
Deparia lanceaChloroplast3
C-to-U: 1
NA: 2
11403-11812
12517-12661
12660
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast3
C-to-U: 1
NA: 2
11692-12101
12802-12946
12945
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
C-to-U: 1
NA: 2
11721-12130
12835-12979
12978
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis cavalerianaChloroplast3
C-to-U: 1
NA: 2
11824-12233
12937-13081
13080
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast3
C-to-U: 1
NA: 2
11880-12289
12998-13142
13141
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast3
C-to-U: 1
NA: 2
11684-12093
12797-12941
12940
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast3
C-to-U: 1
NA: 2
11647-12056
12755-12899
12898
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast3
C-to-U: 1
NA: 2
11697-12106
12812-12956
12955
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast3
C-to-U: 1
NA: 2
11672-12081
12784-12928
12927
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
NA: 2
11695-12104
12804-12948
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast2
NA: 2
11577-11986
12707-12851
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Elaeis guineensisChloroplast1
C-to-U: 1
13468CDSNAC-to-UCCA=>CUAP=>L
Festuca arundinaceaChloroplast2
NA: 2
32780-32938
33755-34162
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast1
C-to-U: 1
13237CDS-C-to-UCCA=>CUAL=>P
Homalosorus pycnocarposChloroplast3
C-to-U: 1
NA: 2
11856-12265
12967-13111
13110
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast3
C-to-U: 1
NA: 2
11633-12042
12772-12916
12915
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast2
NA: 2
11610-12019
12739-12883
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast1
C-to-U: 1
67978CDS-C-to-UCCA=>CUAP=>L
Macrothelypteris torresianaChloroplast3
C-to-U: 1
NA: 2
11773-12182
12888-13032
13031
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast3
C-to-U: 1
NA: 2
11792-12201
12916-13060
13059
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast2
C-to-U: 2
48408CDS
CDS
+C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
Myriopteris lindheimeriChloroplast3
C-to-U: 1
NA: 2
11957-12366
13087-13231
13230
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
12669CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
12609CDS-C-to-UCCA=>CUAP=>L
Nothoceros aenigmaticusPlastid6
NA: 6
21790-21934
21790-23006
22597-23006
Exon
Exon
NA
NA
Exon
Exon
+NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast3
C-to-U: 1
NA: 2
11700-12109
12822-12966
12965
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Orobanche californicaChloroplast2
NA: 2
11917-12327
13366-13611
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pelargonium alternansChloroplast1
C-to-U: 1
19078CDS-C-to-UCCA=>CUAP=>L
Phalaenopsis equestrisChloroplast1
C-to-U: 1
13053CDS-C-to-UCCA=>CUAP=>L
Pseudophegopteris auritaChloroplast2
NA: 2
11734-12143
12846-12990
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast3
C-to-U: 1
NA: 2
11843-12252
12961-13105
13104
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast2
NA: 2
11778-12187
12883-13027
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast3
C-to-U: 1
NA: 2
4791-5200
5880-6024
6023
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Solanum lycopersicumChloroplast3
C-to-U: 3
12266CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
CCA=>CUA
P=>L
P=>L
P=>L
Stegnogramma sagittifoliaChloroplast3
C-to-U: 1
NA: 2
11718-12127
12842-12986
12985
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Syntrichia ruralisChloroplast1
NA: 1
64361-64916NA-NANA=>NANA=>NA
Woodsia macrochlaenaChloroplast2
NA: 2
11665-12074
12806-12950
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
NA: 2
11693-12102
12812-12956
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast3
C-to-U: 1
NA: 2
11708-12117
12830-12974
12973
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)