rpoC2 - Plant Editosome Database - CNCB-NGDC

Summary

Gene: rpoC2
Function: RNA polymerase
Species: 79
Editing Factors:11 (DYW2, DYW2A, DYW2B, IPI1, MORF9, NUWA, ORRM1, PGL3A, PPR26, SLC1, SPL42)
Editing Types:
U-to-C (77)
C-to-U (73)
Editing Sites: 214 (U-to-C: 77   C-to-U: 73   NA: 64)
External Link: NCBI Gene
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
15784-20046CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
16029-20276CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast2
NA: 1
U-to-C: 1
16164-20426
20195
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast45
C-to-U: 15
U-to-C: 30
10008
10023
10029
10065
10066
10068
10182
10189
10209
10269
10429
10578
10582
10621
10639
10665
10893
11422
11438
11460
11495
11593
11617
11634
11657
11768
11777
11980
12090
12363
13135
13200
13215
13374
13377
13477
13531
13618
9626
9724
9741
9796
9880
9931
9936
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
UGA=>CGA
UAA=>CAA
UAU=>CAU
UUU=>CUU
UUU=>UCU
UAG=>CAG
UGA=>CGA
UUA=>UCA
UGC=>CGC
UGA=>CGA
UCA=>UUA
UAA=>CAA
UUU=>UCU
UCC=>UUC
UCC=>UUC
UGA=>CGA
UCU=>CCU
UCU=>UUU
GAU=>GAC
UCA=>CCA
AAU=>AAC
CUC=>CCC
UCA=>UUA
UCU=>CCU
AGU=>AGC
GGU=>GGC
UAU=>UAC
CCA=>CUA
UAA=>CAA
UAA=>CAA
UCA=>UUA
UAA=>CAA
UGU=>CGU
CAU=>UAU
UAG=>CAG
UCU=>UUU
UCA=>UUA
UCU=>UUU
UUC=>UUU
CCU=>CUU
UAA=>CAA
CUG=>CCG
GCG=>GUG
UCA=>UUA
UAA=>CAA
TERM=>R
TERM=>Q
Y=>H
F=>L
F=>S
TERM=>Q
TERM=>R
L=>S
C=>R
TERM=>R
S=>L
TERM=>Q
F=>S
S=>F
S=>F
TERM=>R
S=>P
S=>F
D=>D
S=>P
N=>N
L=>P
S=>L
S=>P
S=>S
G=>G
Y=>Y
P=>L
TERM=>Q
TERM=>Q
S=>L
TERM=>Q
C=>R
H=>Y
TERM=>Q
S=>F
S=>L
S=>F
F=>F
P=>L
TERM=>Q
L=>P
A=>V
S=>L
TERM=>Q
Apopellia endiviifoliaChloroplast1
C-to-U: 1
12577CDS+C-to-UCCU=>CUUP=>L
Asplenium pekinenseChloroplast2
NA: 1
U-to-C: 1
15997-20262
20031
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast2
NA: 1
U-to-C: 1
15752-20029
19798
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast2
NA: 1
U-to-C: 1
16066-20349
20118
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast2
NA: 1
U-to-C: 1
16117-20397
20166
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
NA: 1
U-to-C: 1
16083-20366
20135
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
NA: 1
U-to-C: 1
16094-20374
20143
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
NA: 1
U-to-C: 1
16100-20377
20146
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
NA: 1
U-to-C: 1
16095-20366
20135
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast1
C-to-U: 1
18765CDS-C-to-UUCG=>UUGS=>L
Cypripedium macranthosChloroplast5
C-to-U: 5
17032
17885
18088
19088
19357
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CGG=>UGG
ACA=>AUA
CUC=>UUC
GCC=>GUC
P=>L
R=>W
T=>I
L=>F
A=>V
Cyrtomium devexiscapulaeChloroplast2
NA: 1
U-to-C: 1
16191-20489
20258
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast2
NA: 1
U-to-C: 1
16330-20628
20397
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast2
NA: 1
U-to-C: 1
16154-20434
20203
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast1
NA: 1
15777-20057CDS-NANA=>NANA=>NA
Deparia pycnosoraChloroplast2
NA: 1
U-to-C: 1
16054-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast2
NA: 1
U-to-C: 1
16118-20386
20155
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid5
C-to-U: 5
25834
26495
26644
27488
28517
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
CCA=>CUA
CCC=>UCC
CCG=>CUG
UCA=>UUA
P=>S
P=>L
P=>S
P=>L
S=>L
Diplaziopsis cavalerianaChloroplast2
NA: 1
U-to-C: 1
16216-20478
20247
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast2
NA: 1
U-to-C: 1
16268-20530
20299
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast2
NA: 1
U-to-C: 1
16053-20327
20096
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast2
NA: 1
U-to-C: 1
16007-20284
20053
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
NA: 1
U-to-C: 1
16055-20329
20098
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast2
NA: 1
U-to-C: 1
16036-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
NA: 1
U-to-C: 1
16054-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
30978-35273NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast2
NA: 1
U-to-C: 1
15978-20261
20030
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast3
C-to-U: 3
18087
19528
20041
CDS
CDS
CDS
-
-
-
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGG=>UGG
CGU=>UGU
S=>L
R=>W
R=>C
Hevea brasiliensisChloroplast1
C-to-U: 1
25100CDS+C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast2
NA: 1
U-to-C: 1
16266-20516
20285
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast2
NA: 1
U-to-C: 1
16067-20356
20125
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast2
NA: 1
U-to-C: 1
15984-20264
20033
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast5
C-to-U: 5
73264
74227
74564
74681
74978
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GCU=>GUU
GCU=>GUU
CUU=>UUU
CCG=>UCG
CUU=>UUU
A=>V
A=>V
L=>F
P=>S
L=>F
Isoetes flaccidaChloroplast1
NA: 1
75604-79923CDS-NANA=>NANA=>NA
Jenufa minutaChloroplast1
NA: 1
350-7084CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast2
NA: 1
U-to-C: 1
14872-19152
18921
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast5
C-to-U: 5
10687
11521
12392
13106
14674
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCC=>UUC
UCU=>UUU
CGG=>UGG
CUU=>UUU
GCC=>GUC
S=>F
S=>F
R=>W
L=>F
A=>V
Lygodium japonicumChloroplast1
NA: 1
16633-20919CDS-NANA=>NANA=>NA
Machilus balansaeChloroplast1
NA: 1
17530-21696CDS-NANA=>NANA=>NA
Machilus pauhoiChloroplast1
NA: 1
17533-21699CDS-NANA=>NANA=>NA
Machilus thunbergiiChloroplast1
NA: 1
17569-21735CDS-NANA=>NANA=>NA
Machilus yunnanensisChloroplast1
NA: 1
17496-21662CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast3
NA: 1
U-to-C: 2
16177-20454
16683
20223
CDS
NA
NA
-
+
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast1
NA: 1
18943-23160CDS-NANA=>NANA=>NA
Matteuccia struthiopterisChloroplast2
NA: 1
U-to-C: 1
16172-20488
20257
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast1
C-to-U: 1
44084CDS+C-to-UUCA=>UUAS=>L
Myriopteris lindheimeriChloroplast2
NA: 1
U-to-C: 1
16405-20658
20427
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast1
C-to-U: 1
17592CDS-C-to-UUCA=>UUAS=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
17544CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid1
NA: 1
14333-18718NA+NANA=>NANA=>NA
Onoclea sensibilisChloroplast2
NA: 1
U-to-C: 1
16130-20404
20173
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast2
C-to-U: 2
29017
29089
CDS
CDS
NA
NA
C-to-U
C-to-U
NA=>NA
NA=>NA
S=>L
S=>L
Pelargonium alternansChloroplast5
C-to-U: 5
23554
24920
25664
26440
27565
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCC=>UUC
CCC=>UCC
CUU=>UUU
ACA=>AUA
GCC=>GUC
S=>F
P=>S
L=>F
T=>I
A=>V
Persea americanaChloroplast1
NA: 1
17581-21747CDS-NANA=>NANA=>NA
Phalaenopsis equestrisChloroplast1
C-to-U: 1
18516CDS-C-to-UUCU=>UUUS=>F
Phoebe bourneiChloroplast1
NA: 1
17578-21744CDS-NANA=>NANA=>NA
Phoebe chekiangensisChloroplast1
NA: 1
17576-21742CDS-NANA=>NANA=>NA
Phoebe omeiensisChloroplast1
NA: 1
17613-21779CDS-NANA=>NANA=>NA
Phoebe sheareriChloroplast1
NA: 1
17613-21779CDS-NANA=>NANA=>NA
Phoebe zhennanChloroplast1
NA: 1
17556-21722CDS-NANA=>NANA=>NA
Piper auritumPlastid1
NA: 1
17251-21393CDS-NANA=>NANA=>NA
Pseudophegopteris auritaChloroplast2
NA: 1
U-to-C: 1
15884-20161
19930
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast2
NA: 1
U-to-C: 1
16198-20466
20235
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ptilidium pulcherrimumChloroplast1
NA: 1
12143-16201NA+NANA=>NANA=>NA
Rhachidosorus consimilisChloroplast3
NA: 1
U-to-C: 2
16167-20444
16187
20213
CDS
NA
NA
-
+
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast1
C-to-U: 1
91837CDS+C-to-UUCG=>UUGS=>L
Schizaea elegansChloroplast6
C-to-U: 1
NA: 1
U-to-C: 4
12109
12640
13186
13198
13911
9734-13912
NA
NA
NA
NA
NA
CDS
+
+
+
+
+
-
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast6
C-to-U: 1
NA: 1
U-to-C: 4
11360
11882
12440
12938
13153
8979-13154
NA
NA
NA
NA
NA
CDS
+
+
+
+
+
-
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Solanum lycopersicumChloroplast1
C-to-U: 1
17197CDS-C-to-UUCA=>UUAS=>L
Stegnogramma sagittifoliaChloroplast2
NA: 1
U-to-C: 1
16097-20383
20152
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Takakia lepidozioidesChloroplast1
NA: 1
13737-17927NA+NANA=>NANA=>NA
Woodsia macrochlaenaChloroplast2
NA: 1
U-to-C: 1
16023-20303
20072
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
NA: 1
U-to-C: 1
16045-20337
20106
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast2
NA: 1
U-to-C: 1
16090-20367
20136
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Sep 2026 (version 2.0)