rpoC2 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpoC2
Function: RNA polymerase
Species: 79
Editing Factors:2 (ORRM1, OsSLC1)
Editing Types:
U-to-C (77)
C-to-U (73)
Editing Events: 214 (U-to-C: 77   C-to-U: 73   NA: 64)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
15784-20046CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
16029-20276CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast2
NA: 1
U-to-C: 1
16164-20426
20195
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast45
C-to-U: 15
U-to-C: 30
10008
10023
10029
10065
10066
10068
10182
10189
10209
10269
10429
10578
10582
10621
10639
10665
10893
11422
11438
11460
11495
11593
11617
11634
11657
11768
11777
11980
12090
12363
13135
13200
13215
13374
13377
13477
13531
13618
9626
9724
9741
9796
9880
9931
9936
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
C-to-U
UGA=>CGA
UAA=>CAA
UAA=>CAA
UCA=>UUA
GAU=>GAC
CCU=>CUU
UCA=>UUA
UAG=>CAG
UAA=>CAA
UAU=>UAC
UCA=>UUA
UUA=>UCA
AAU=>AAC
UCA=>UUA
UAA=>CAA
UCU=>UUU
UCU=>CCU
CUG=>CCG
GGU=>GGC
UGA=>CGA
CAU=>UAU
UAA=>CAA
GCG=>GUG
UAA=>CAA
UAG=>CAG
UUU=>UCU
UGA=>CGA
UCC=>UUC
UUU=>CUU
UAA=>CAA
UGA=>CGA
UGU=>CGU
UUC=>UUU
UGC=>CGC
UCC=>UUC
UCU=>UUU
UCA=>CCA
UAU=>CAU
UCA=>UUA
UUU=>UCU
UCU=>CCU
AGU=>AGC
CUC=>CCC
CCA=>CUA
UCU=>UUU
TERM=>R
TERM=>Q
TERM=>Q
S=>L
D=>D
P=>L
S=>L
TERM=>Q
TERM=>Q
Y=>Y
S=>L
L=>S
N=>N
S=>L
TERM=>Q
S=>F
S=>P
L=>P
G=>G
TERM=>R
H=>Y
TERM=>Q
A=>V
TERM=>Q
TERM=>Q
F=>S
TERM=>R
S=>F
F=>L
TERM=>Q
TERM=>R
C=>R
F=>F
C=>R
S=>F
S=>F
S=>P
Y=>H
S=>L
F=>S
S=>P
S=>S
L=>P
P=>L
S=>F
Apopellia endiviifoliaChloroplast1
C-to-U: 1
12577CDS+C-to-UCCU=>CUUP=>L
Asplenium pekinenseChloroplast2
NA: 1
U-to-C: 1
15997-20262
20031
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast2
NA: 1
U-to-C: 1
15752-20029
19798
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast2
NA: 1
U-to-C: 1
16066-20349
20118
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast2
NA: 1
U-to-C: 1
16117-20397
20166
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
NA: 1
U-to-C: 1
16083-20366
20135
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
NA: 1
U-to-C: 1
16094-20374
20143
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
NA: 1
U-to-C: 1
16100-20377
20146
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
NA: 1
U-to-C: 1
16095-20366
20135
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast2
C-to-U: 2
18765CDS
CDS
-C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
S=>L
S=>L
Cypripedium macranthosChloroplast5
C-to-U: 5
17032
17885
18088
19088
19357
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
CCA=>CUA
CUC=>UUC
CGG=>UGG
GCC=>GUC
T=>I
P=>L
L=>F
R=>W
A=>V
Cyrtomium devexiscapulaeChloroplast2
NA: 1
U-to-C: 1
16191-20489
20258
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast2
NA: 1
U-to-C: 1
16330-20628
20397
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast2
NA: 1
U-to-C: 1
16154-20434
20203
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast1
NA: 1
15777-20057CDS-NANA=>NANA=>NA
Deparia pycnosoraChloroplast2
NA: 1
U-to-C: 1
16054-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast2
NA: 1
U-to-C: 1
16118-20386
20155
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid5
C-to-U: 5
25834
26495
26644
27488
28517
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
UCA=>UUA
CCA=>CUA
CCG=>CUG
CCC=>UCC
P=>S
S=>L
P=>L
P=>L
P=>S
Diplaziopsis cavalerianaChloroplast2
NA: 1
U-to-C: 1
16216-20478
20247
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast2
NA: 1
U-to-C: 1
16268-20530
20299
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast2
NA: 1
U-to-C: 1
16053-20327
20096
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast2
NA: 1
U-to-C: 1
16007-20284
20053
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
NA: 1
U-to-C: 1
16055-20329
20098
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast2
NA: 1
U-to-C: 1
16036-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
NA: 1
U-to-C: 1
16054-20331
20100
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
30978-35273NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast2
NA: 1
U-to-C: 1
15978-20261
20030
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast3
C-to-U: 3
18087
19528
20041
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
CGG=>UGG
CGU=>UGU
S=>L
R=>W
R=>C
Hevea brasiliensisChloroplast1
C-to-U: 1
25100CDS+C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast2
NA: 1
U-to-C: 1
16266-20516
20285
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast2
NA: 1
U-to-C: 1
16067-20356
20125
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast2
NA: 1
U-to-C: 1
15984-20264
20033
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast5
C-to-U: 5
73264
74227
74564
74681
74978
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CUU=>UUU
GCU=>GUU
CCG=>UCG
GCU=>GUU
L=>F
L=>F
A=>V
P=>S
A=>V
Isoetes flaccidaChloroplast1
NA: 1
75604-79923CDS-NANA=>NANA=>NA
Jenufa minutaChloroplast1
NA: 1
350-7084CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast2
NA: 1
U-to-C: 1
14872-19152
18921
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast5
C-to-U: 5
10687
11521
12392
13106
14674
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
UCC=>UUC
CUU=>UUU
UCU=>UUU
GCC=>GUC
R=>W
S=>F
L=>F
S=>F
A=>V
Lygodium japonicumChloroplast1
NA: 1
16633-20919CDS-NANA=>NANA=>NA
Machilus balansaeChloroplast1
NA: 1
17530-21696CDS-NANA=>NANA=>NA
Machilus pauhoiChloroplast1
NA: 1
17533-21699CDS-NANA=>NANA=>NA
Machilus thunbergiiChloroplast1
NA: 1
17569-21735CDS-NANA=>NANA=>NA
Machilus yunnanensisChloroplast1
NA: 1
17496-21662CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast3
NA: 1
U-to-C: 2
16177-20454
16683
20223
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast1
NA: 1
18943-23160CDS-NANA=>NANA=>NA
Matteuccia struthiopterisChloroplast2
NA: 1
U-to-C: 1
16172-20488
20257
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast2
C-to-U: 2
44084CDS
CDS
+C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Myriopteris lindheimeriChloroplast2
NA: 1
U-to-C: 1
16405-20658
20427
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
17592CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
17544CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid2
NA: 2
14333-18718NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
NA: 1
U-to-C: 1
16130-20404
20173
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast2
C-to-U: 2
29017
29089
CDS
CDS
NAC-to-U
C-to-U
NA=>NA
NA=>NA
S=>L
S=>L
Pelargonium alternansChloroplast5
C-to-U: 5
23554
24920
25664
26440
27565
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
ACA=>AUA
UCC=>UUC
CUU=>UUU
GCC=>GUC
P=>S
T=>I
S=>F
L=>F
A=>V
Persea americanaChloroplast1
NA: 1
17581-21747CDS-NANA=>NANA=>NA
Phalaenopsis equestrisChloroplast1
C-to-U: 1
18516CDS-C-to-UUCU=>UUUS=>F
Phoebe bourneiChloroplast1
NA: 1
17578-21744CDS-NANA=>NANA=>NA
Phoebe chekiangensisChloroplast1
NA: 1
17576-21742CDS-NANA=>NANA=>NA
Phoebe omeiensisChloroplast1
NA: 1
17613-21779CDS-NANA=>NANA=>NA
Phoebe sheareriChloroplast1
NA: 1
17613-21779CDS-NANA=>NANA=>NA
Phoebe zhennanChloroplast1
NA: 1
17556-21722CDS-NANA=>NANA=>NA
Piper auritumPlastid1
NA: 1
17251-21393CDS-NANA=>NANA=>NA
Pseudophegopteris auritaChloroplast2
NA: 1
U-to-C: 1
15884-20161
19930
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast2
NA: 1
U-to-C: 1
16198-20466
20235
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ptilidium pulcherrimumChloroplast1
NA: 1
12143-16201NA+NANA=>NANA=>NA
Rhachidosorus consimilisChloroplast3
NA: 1
U-to-C: 2
16167-20444
16187
20213
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast1
C-to-U: 1
91837CDS+C-to-UUCG=>UUGS=>L
Schizaea elegansChloroplast6
C-to-U: 1
NA: 1
U-to-C: 4
12109
12640
13186
13198
13911
9734-13912
CDS
NA
NA
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast6
C-to-U: 1
NA: 1
U-to-C: 4
11360
11882
12440
12938
13153
8979-13154
CDS
NA
NA
NA
NA
NA
-
+
NA
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Solanum lycopersicumChloroplast3
C-to-U: 3
17197CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
Stegnogramma sagittifoliaChloroplast2
NA: 1
U-to-C: 1
16097-20383
20152
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Takakia lepidozioidesChloroplast1
NA: 1
13737-17927NA+NANA=>NANA=>NA
Woodsia macrochlaenaChloroplast2
NA: 1
U-to-C: 1
16023-20303
20072
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
NA: 1
U-to-C: 1
16045-20337
20106
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast2
NA: 1
U-to-C: 1
16090-20367
20136
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)