rpl20 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpl20
Function: Ribosomal protein
Species: 29
Editing Factors:1 (ORRM1)
Editing Types:
C-to-U (36)
U-to-C (1)
Editing Events: 59 (C-to-U: 36   NA: 22   U-to-C: 1)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
63660-64016CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
67425-67781CDS-NANA=>NANA=>NA
Anthoceros angustusChloroplast3
C-to-U: 1
NA: 1
U-to-C: 1
87066-87404
87116
87320
NA
CDS
NA
+
-
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium pekinenseChloroplast2
C-to-U: 1
NA: 1
63513-63869
63515
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
C-to-U: 1
NA: 1
64540-64896
64542
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
C-to-U: 1
NA: 1
64644-65000
64999
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Conopholis americanaPlastid1
NA: 1
12436-12843CDS-NANA=>NANA=>NA
Cypripedium macranthosChloroplast1
C-to-U: 1
69864CDS-C-to-UUCA=>UUAS=>L
Dendrobium officinaleChloroplast2
C-to-U: 2
68701
68983
CDS
CDS
-C-to-U
C-to-U
ACA=>AUA
UCA=>UUA
T=>I
S=>L
Deschampsia antarcticaPlastid1
C-to-U: 1
65868CDS-C-to-UUCA=>UUAS=>L
Diplopterygium glaucumChloroplast1
NA: 1
81583-81927NA-NANA=>NANA=>NA
Dunalia obovataChloroplast1
NA: 1
71838-72250CDS-NANA=>NANA=>NA
Forsythia suspensaChloroplast1
C-to-U: 1
71789CDS-C-to-UUCA=>UUAS=>L
Hypseocharis bilobataChloroplast2
C-to-U: 2
32423
32600
CDS
CDS
+C-to-U
C-to-U
GCU=>GUU
UCA=>UUA
A=>V
S=>L
Isoetes flaccidaChloroplast1
NA: 1
18346-18693CDS+NANA=>NANA=>NA
Linum usitatissimumChloroplast3
C-to-U: 3
63026
63098
63131
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
ACA=>AUA
GCU=>GUU
UCU=>UUU
T=>I
A=>V
S=>F
Marsilea crenataChloroplast1
NA: 1
69359-69715CDS-NANA=>NANA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
71105CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
70926CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid2
NA: 2
88635-88997NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
67672CDSNAC-to-UNA=>NAS=>L
Pelargonium alternansChloroplast3
C-to-U: 3
81381
81433
81558
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
GCU=>GUU
CAC=>UAC
UCA=>UUA
A=>V
H=>Y
S=>L
Pteridium aquilinum subsp. aquilinumChloroplast2
C-to-U: 1
NA: 1
66184-66540
66539
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast1
C-to-U: 1
130563CDS-C-to-UUCA=>UUAS=>L
Solanum lycopersicumChloroplast3
C-to-U: 3
70522CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
Spirodela polyrhiza 7498Chloroplast2
NA: 2
74935-75288CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast2
C-to-U: 1
NA: 1
64347-64703
64702
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
C-to-U: 1
NA: 1
64061-64417
64416
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)