PGL2 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PGL2
Synonym: Pale Green Leaf 2; GmPGL2
Description: A Glycine max pale green leaf 2 mutant (Gmpgl2) was identified with decreased chlorophyll contents; The C-to-U editing efficiencies of rps16, rps18, ndhB, ndhD, ndhE, and ndhF were reduced in the Gmpgl2 mutant; RNA electrophoresis mobility shift assay (REMSA) analysis further revealed that GmPGL2 binds to the immediate upstream sequences at RNA editing sites of rps16 and ndhB in vitro, respectively; In addition, GmPGL2 was found to interact with GmMORF8, GmMORF9, and GmORRM6
Protein Family: PPR
Subclass: E+
Construct Structure: PLS-E1-E2-E+
Gene ID & Species: Glyma.05g132700 (Glycine max)
Edited Gene(s): atpF    ndhB    ndhD    ndhE    rpoC1    rps14    rps16    rps18    rps12
Editing Type(s): C-to-U (80)
Publication(s): [1] , Encoding a Pentatricopeptide Repeat Protein, Is Essential for Chloroplast RNA Editing and Biogenesis in Soybean., Frontiers in plant science, 2021. [PMID=34567023]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Glycine max Glyma.05g132700 Chloroplast atpF NA CDS C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq86.50%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq90.61%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq72.21%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq74.35%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhB NA CDS C-to-U NA=>NA S=>L
H=>Y
P=>L
S=>F
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq92.33%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq80.00%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq68.57%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq78.67%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq77.03%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq87.68%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq53.58%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq59.70%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq61.89%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq84.78%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq33.91%LowDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq51.22%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq82.14%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq90.21%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq60.49%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq66.95%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq73.86%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq92.19%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq47.35%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq71.96%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq76.93%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq89.32%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq61.82%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq72.92%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq78.49%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.12%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq61.73%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq75.21%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq64.08%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.35%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq50.08%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq81.80%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq69.47%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.50%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq49.78%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq79.97%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhD NA CDS C-to-U NA=>NA T=>M
S=>L
T=>I
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq41.35%MediumNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq83.96%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq18.75%PoorDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq55.69%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq44.95%MediumNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq46.69%MediumNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq28.91%LowDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq37.30%LowSimilar34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq73.33%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq84.51%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq57.33%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq71.82%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhE NA CDS C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq64.74%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq80.82%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq42.93%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq52.57%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rpoC1 NA CDS C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq74.02%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq62.27%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq60.08%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq47.24%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rps12 NA Intergenic regi
Intron
C-to-U NA=>NA NA=>NA Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq36.84%LowNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq0.00%UneditedNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq0.00%UneditedAbsent34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq0.00%UneditedSimilar34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq80.00%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq71.91%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq51.23%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq49.59%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rps14 NA CDS C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq87.54%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq75.43%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq77.29%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq68.19%HighSimilar34567023
Glycine max Glyma.05g132700 Chloroplast rps16 NA CDS C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq79.02%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq77.48%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq0.00%UneditedAbsent34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq0.00%UneditedAbsent34567023
Glycine max Glyma.05g132700 Chloroplast rps18 NA CDS C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq84.39%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq72.97%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq57.89%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq50.63%MediumDecreased34567023
Last update: Jul 2021 (version 1.0)