PGL2 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: PGL2
Synonym: Pale Green Leaf 2; GmPGL2
Description: A Glycine max pale green leaf 2 mutant (Gmpgl2) was identified with decreased chlorophyll contents; The C-to-U editing efficiencies of rps16, rps18, ndhB, ndhD, ndhE, and ndhF were reduced in the Gmpgl2 mutant; RNA electrophoresis mobility shift assay (REMSA) analysis further revealed that GmPGL2 binds to the immediate upstream sequences at RNA editing sites of rps16 and ndhB in vitro, respectively; In addition, GmPGL2 was found to interact with GmMORF8, GmMORF9, and GmORRM6
Protein Family: PPR
Subclass: E+
Physical Interaction: MORF8; MORF9; ORRM6
Construct Structure: PLS-E1-E2-E+
Gene ID & Species: Glyma.05g132700 (Glycine max)
Edited Gene(s): atpF    ndhB    ndhD    ndhE    rpoC1    rps14    rps16    rps18    rps12
Editing Type(s): C-to-U (80)
Publication(s): [1] , Encoding a Pentatricopeptide Repeat Protein, Is Essential for Chloroplast RNA Editing and Biogenesis in Soybean., Frontiers in plant science, 2021. [PMID=34567023]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Glycine max Glyma.05g132700 Chloroplast atpF NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 48596 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq86.50%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq90.61%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq72.21%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq74.35%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhB NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 139627
141281
141424
141005
140215
140224
140999
140064
141650
C-to-U NA=>NA S=>L
H=>Y
P=>L
S=>F
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq92.33%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq80.00%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq68.57%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq78.67%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq77.03%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq87.68%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq53.58%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq59.70%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq61.89%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq84.78%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq33.91%LowDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq51.22%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq82.14%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq90.21%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq60.49%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq66.95%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq73.86%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq92.19%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq47.35%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq71.96%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq76.93%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq89.32%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq61.82%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq72.92%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq78.49%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.12%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq61.73%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq75.21%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq64.08%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.35%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq50.08%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq81.80%HighDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq69.47%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq91.50%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq49.78%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq79.97%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhD NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 120618
121914
120999
C-to-U NA=>NA T=>M
S=>L
T=>I
Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq41.35%MediumNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq83.96%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq18.75%PoorDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq55.69%MediumDecreased34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq44.95%MediumNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq46.69%MediumNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq28.91%LowDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq37.30%LowSimilar34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq73.33%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq84.51%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq57.33%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq71.82%HighDecreased34567023
Glycine max Glyma.05g132700 Chloroplast ndhE NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 119873 C-to-U NA=>NA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq64.74%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq80.82%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq42.93%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq52.57%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rpoC1 NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 38778 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq74.02%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq62.27%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq60.08%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq47.24%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rps12 NA Intergenic regi
Intron
Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 106113
138416
C-to-U NA=>NA NA=>NA Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq36.84%LowNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq0.00%UneditedNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq0.00%UneditedAbsent34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq0.00%UneditedSimilar34567023
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq80.00%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq71.91%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq51.23%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq49.59%MediumDecreased34567023
Glycine max Glyma.05g132700 Chloroplast rps14 NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 23651 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq87.54%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq75.43%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq77.29%HighDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq68.19%HighSimilar34567023
Glycine max Glyma.05g132700 Chloroplast rps16 NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 56313 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq79.02%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq77.48%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq0.00%UneditedAbsent34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq0.00%UneditedAbsent34567023
Glycine max Glyma.05g132700 Chloroplast rps18 NA CDS Williams 82 (Glycine max Wm82.a2.v1) NC_007942.1 Genomic position 66641 C-to-U NA=>NA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Hedou12 (HD12)HD12-S1ControlControlNo mutantNormalLeaf12-day-oldRNA-Seq84.39%HighNone34567023
Hedou12 (HD12)HD12-S2ControlControlNo mutantNormalSeedling18-day-oldRNA-Seq72.97%HighNone34567023
Hedou12 (HD12)Gmpgl2-S1A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Leaf12-day-oldRNA-Seq57.89%MediumDecreased34567023
Hedou12 (HD12)Gmpgl2-S2A single-nucleotide deletionThe Gmpgl2 mutant was screened in June 2011 from the 60-CO γ-radiation mutagenized Hedou12 (HD12) population as described previously (Cheng et al., 2016a). Genetic mapping revealed that a single-nucleNAPale green leaf. The components of total chlorophyll (Chl), chlorophyll a (Chla), and chlorophyll b (Chlb) in the leaves of the Gmpgl2 mutants decreased by 40.4, 42.7, and 35.7% of the respective values in the wild-type leaves. The carotenoid (Car) content in the leaves of the mutant plants was 80% that in the leaves of wild-type plants. Furthermore, the ratio of Chl/Car in the Gmpgl2 mutant was lower than in the wild type.Seedling18-day-oldRNA-Seq50.63%MediumDecreased34567023
Last update: Feb 2026 (version 2.0)