rps16 - Plant Editosome Database - BIG Data Center

Summary

Gene: rps16
Function: Ribosomal protein
Species: 45
Editing Factors:1 (YL)
Editing Types:
U-to-C (36)
C-to-U (35)
Editing Events: 160 (NA: 89   U-to-C: 36   C-to-U: 35)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Ampelopteris proliferaChloroplast3
NA: 2
U-to-C: 1
3637-3867
3657
4664-4705
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast6
C-to-U: 5
U-to-C: 1
27572
27573
27625
27626
27629
27671
CDS
CDS
CDS
CDS
CDS
CDS
+U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>CCU
UCA=>UUA
UCC=>UUC
ACU=>AUU
UCC=>UCU
UCU=>UUU
S=>P
S=>L
S=>F
T=>I
S=>S
S=>F
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
5032NA+C-to-UNA=>NANA=>NA
Asplenium pekinenseChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
3549-3779
3569
3590
4571-4612
4611
NA
NA
CDS
NA
CDS
+
-
U-to-C
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
3563-3793
3583
3604
4581-4622
4621
NA
CDS
NA
CDS
NA
+
-
U-to-C
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3588-3818
3608
4605-4646
4645
NA
CDS
NA
CDS
+
-
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3597-3827
3617
4615-4656
4655
CDS
NA
CDS
NA
-
+
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3608-3838
3628
4619-4660
4659
NA
CDS
NA
CDS
+
-
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3598-3828
3618
4631-4672
4671
NA
CDS
NA
CDS
+
-
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast3
NA: 2
U-to-C: 1
3566-3796
3586
4588-4629
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast3
NA: 2
U-to-C: 1
3628-3858
3648
4661-4702
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Coix lacryma-jobiChloroplast3
NA: 3
4505-4723
4505-5584
5546-5584
CDS
NA
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium devexiscapulaeChloroplast3
NA: 2
U-to-C: 1
3664-3894
3684
4720-4761
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast3
NA: 2
U-to-C: 1
3590-3820
3610
4626-4667
CDS
NA
CDS
-
+
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3574-3819
3600
4620-4661
4660
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3591-3821
3611
4615-4656
4655
NA
CDS
NA
CDS
+
-
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3593-3823
3613
4614-4655
4654
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis cavalerianaChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
3620-3865
3640
3655
4691-4732
4731
CDS
NA
CDS
NA
NA
-
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3635-3862
3652
4703-4744
4743
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast3
C-to-U: 1
NA: 2
3556-3786
4559-4600
4599
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast4
NA: 2
U-to-C: 2
3565-3795
3585
3606
4573-4614
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast3
C-to-U: 1
NA: 2
3568-3798
4577-4618
4617
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast3
C-to-U: 1
NA: 2
3586-3816
4594-4635
4634
CDS
CDS
NA
-
+
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3645-3875
3665
4674-4715
4714
NA
CDS
NA
CDS
+
-
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Elaeis guineensisChloroplast1
C-to-U: 1
5452IntronNAC-to-UCCC=>CCUNA=>NA
Hevea brasiliensisChloroplast1
C-to-U: 1
6032IntronNAC-to-UNA=>NANA=>NA
Homalosorus pycnocarposChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3676-3903
3693
4721-4762
4761
NA
CDS
NA
CDS
+
-
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Huperzia lucidulaChloroplast2
NA: 2
70977-71191
71909-71948
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast3
C-to-U: 1
NA: 2
3424-3654
4474-4515
4514
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast3
NA: 2
U-to-C: 1
3616-3846
3636
4654-4695
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lepisorus clathratusChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
2428-2661
2643
2649
3448-3489
3488
NA
CDS
NA
CDS
NA
+
-
U-to-C
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Macrothelypteris torresianaChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3628-3864
3654
4669-4710
4709
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3623-3853
3643
4639-4680
4679
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nothoceros aenigmaticusPlastid6
NA: 6
31395-31434
31395-32452
32238-32452
Exon
Exon
NA
NA
Exon
Exon
+NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast3
NA: 2
U-to-C: 1
3533-3763
3553
4572-4613
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
5219IntronNAC-to-UNA=>NANA=>NA
Phalaenopsis equestrisChloroplast1
C-to-U: 1
5036CDS-C-to-UUCA=>UUAS=>L
Pseudophegopteris auritaChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3613-3843
3633
4661-4702
4701
NA
CDS
NA
CDS
+
-
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3569-3799
3589
4617-4658
4657
NA
CDS
NA
CDS
+
-
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saracha punctataChloroplast2
NA: 2
5104-5318
6175-6214
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast3
C-to-U: 1
NA: 2
68267-68671
69548-69556
69555
NA
CDS
CDS
+
-
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Stegnogramma sagittifoliaChloroplast3
NA: 2
U-to-C: 1
3623-3853
3643
4658-4699
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast3
NA: 2
U-to-C: 1
3588-3830
3614
4620-4661
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3599-3841
3625
4643-4684
4683
CDS
NA
CDS
NA
-
+
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
3566-3796
3568
3586
4616-4657
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)