rpoC1 - Plant Editosome Database - CNCB-NGDC

Summary

Gene: rpoC1
Function: RNA polymerase
Species: 68
Editing Factors:22 (DOT4, DYW2, ECB2, HDS, HEMC, MEF37, MORF2, MORF8, MORF9, ORRM1, ORRM6, OTP90, OZ1, PAP2, PGL2, PGN, PPO1, PPR138, RPOTp, SL1, TRX z, YL)
Editing Types:
U-to-C (85)
C-to-U (85)
Editing Sites: 285 (NA: 115   U-to-C: 85   C-to-U: 85)
External Link: NCBI Gene
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast2
NA: 2
20190-21854
22577-23008
CDS
CDS
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Alsophila spinulosaChloroplast2
NA: 2
20404-22035
22767-23198
CDS
CDS
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast4
NA: 2
U-to-C: 2
20585-22255
21427
22971-23402
23288
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast32
C-to-U: 15
U-to-C: 17
6855
6894
6986
7095
8147
8244
8253
8304
8321
8439
8456
8462
8466
8499
8537
8558
8586
8604
8628
8652
8738
8805
8832
8864
8877
8892
8915
8970
9003
9077
9393
9396
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
UCG=>UUG
UCU=>UUU
CGU=>UGU
CUU=>CCU
UAA=>CAA
CUG=>CCG
CUU=>CCU
UUC=>UCC
CAU=>UAU
CCU=>CUU
UGU=>CGU
UAA=>CAA
CUU=>CCU
UUG=>UCG
UGC=>CGC
UGA=>CGA
ACU=>AUU
CCU=>CUU
CUC=>CCC
UCU=>UUU
UCU=>CCU
AUU=>ACU
UCU=>UUU
UGU=>CGU
UCA=>UUA
UCU=>UUU
UAA=>CAA
UCA=>UUA
GCU=>GUU
UGA=>CGA
CCU=>CUU
UCC=>UUC
S=>L
S=>F
R=>C
L=>P
TERM=>Q
L=>P
L=>P
F=>S
H=>Y
P=>L
C=>R
TERM=>Q
L=>P
L=>S
C=>R
TERM=>R
T=>I
P=>L
L=>P
S=>F
S=>P
I=>T
S=>F
C=>R
S=>L
S=>F
TERM=>Q
S=>L
A=>V
TERM=>R
P=>L
S=>F
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
21690NA+C-to-UNA=>NANA=>NA
Arabidopsis thalianaChloroplast1
C-to-U: 1
21785CDS-C-to-UUCA=>UUAS=>L
Asplenium pekinenseChloroplast4
NA: 2
U-to-C: 2
20387-22018
21190
22716-23147
23033
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast3
NA: 2
U-to-C: 1
20169-21836
22551-22982
22868
CDS
CDS
NA
-
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast3
NA: 2
U-to-C: 1
20481-22145
21317
22839-23270
CDS
NA
CDS
-
+
-
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast3
NA: 2
U-to-C: 1
20512-22176
21348
22865-23296
CDS
NA
CDS
-
+
-
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast3
NA: 2
U-to-C: 1
20459-22123
21295
22825-23256
CDS
NA
CDS
-
+
-
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
20499-22163
21335
22865-23296
23295
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
20544-22208
22915-23346
23232
23345
CDS
CDS
NA
NA
-
-
+
+
NA
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast4
NA: 2
U-to-C: 2
20474-22144
21316
22858-23289
23175
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast3
C-to-U: 3
22685
22791
23261
CDS
CDS
CDS
-
-
-
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGG=>UGG
CCA=>CUA
S=>L
R=>W
P=>L
Cuscuta reflexaChloroplast1
C-to-U: 1
19224CDS-C-to-UUCG=>UUGS=>L
Cypripedium macranthosChloroplast3
C-to-U: 3
22218
22320
22359
CDS
CDS
CDS
-
-
-
C-to-U
C-to-U
C-to-U
UCU=>UUU
ACC=>AUC
CCA=>CUA
S=>F
T=>I
P=>L
Cyrtomium devexiscapulaeChloroplast4
NA: 2
U-to-C: 2
20659-22281
21453
22966-23397
23283
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast4
NA: 2
U-to-C: 2
20798-22407
21592
23104-23536
23422
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast4
NA: 2
U-to-C: 2
20558-22222
21394
22929-23360
23246
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast3
C-to-U: 3
22528
22963
23104
CDS
CDS
CDS
-
-
-
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCU=>UUU
CCA=>CUA
S=>L
S=>F
P=>L
Deparia lanceaChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20171-21835
21007
22553-22984
22870
22983
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast4
NA: 2
U-to-C: 2
20445-22109
21281
22823-23254
23140
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
NA: 2
U-to-C: 1
20500-22164
22862-23293
23179
CDS
CDS
NA
-
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis cavalerianaChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20592-22256
21428
22940-23371
23257
23370
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast4
NA: 2
U-to-C: 2
20644-22308
21480
22994-23425
23311
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20441-22105
21277
22809-23240
23126
23239
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20409-22073
21245
22776-23207
23093
23206
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast4
NA: 2
U-to-C: 2
20443-22107
21279
22817-23248
23134
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast4
NA: 2
U-to-C: 2
20456-22120
21292
22816-23247
23133
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20467-22122
21294
22825-23256
23142
23255
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast2
NA: 2
35413-37038
37807-38232
NA
NA
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast4
NA: 2
U-to-C: 2
20436-22058
21230
22750-23181
23067
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hevea brasiliensisChloroplast1
C-to-U: 1
19184CDS+C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20630-22294
21466
22983-23414
23300
23413
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast3
NA: 2
U-to-C: 1
20478-22142
22853-23284
23170
CDS
CDS
NA
-
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast4
NA: 2
U-to-C: 2
20386-22050
21222
22758-23189
23075
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast1
C-to-U: 1
78698CDS-C-to-UACC=>AUCT=>I
Isoetes flaccidaChloroplast2
NA: 2
80041-81678
82435-82863
CDS
CDS
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Jenufa minutaChloroplast1
NA: 1
134166-138074CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast4
NA: 2
U-to-C: 2
19325-20974
19387
21737-22168
22054
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast1
C-to-U: 1
16894CDS-C-to-UUCG=>UUGS=>L
Lygodium japonicumChloroplast1
NA: 1
21036-23057CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast4
NA: 2
U-to-C: 2
20568-22238
21410
22953-23384
23270
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast2
NA: 2
23337-24965
25671-26102
CDS
CDS
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20604-22268
21440
22980-23411
23297
23410
CDS
NA
CDS
NA
NA
-
+
-
+
+
NA
U-to-C
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast2
C-to-U: 2
37332
38584
CDS
CDS
+
+
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Myriopteris lindheimeriChloroplast4
NA: 2
U-to-C: 2
20786-22432
21616
23129-23560
23446
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast1
C-to-U: 1
23498CDS-C-to-UUCA=>UUAS=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
23429CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid3
NA: 3
11441-11872
11441-14229
12616-14229
Exon
NA
Exon
+
+
+
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast4
NA: 2
U-to-C: 2
20521-22185
21357
22891-23322
23208
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pelargonium alternansChloroplast6
C-to-U: 6
27713
28464
28670
28760
29184
29684
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACU=>AUU
CCG=>UCG
GCU=>GUU
ACG=>AUG
CUU=>UUU
ACC=>AUC
T=>I
P=>S
A=>V
T=>M
L=>F
T=>I
Phalaenopsis equestrisChloroplast4
C-to-U: 4
22972
23101
23410
23551
CDS
CDS
CDS
CDS
-
-
-
-
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCU=>UUU
UCA=>UUA
S=>L
S=>L
S=>F
S=>L
Pseudophegopteris auritaChloroplast4
NA: 2
U-to-C: 2
20276-21946
21118
22655-23086
22972
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast3
NA: 2
U-to-C: 1
20574-22219
22901-23333
23219
CDS
CDS
NA
-
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast4
NA: 2
U-to-C: 2
20566-22230
21402
22942-23373
23259
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea elegansChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
14028-15614
16453-16884
16770
16883
CDS
CDS
NA
NA
-
-
+
+
NA
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
13244-14851
15684-16115
16001
16114
CDS
CDS
NA
NA
-
-
+
+
NA
NA
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Sedum sarmentosumChloroplast1
NA: 1
20615-22273CDS-NANA=>NANA=>NA
Solanum lycopersicumChloroplast1
C-to-U: 1
23085CDS-C-to-UUCA=>UUAS=>L
Spirodela polyrhiza 7498Chloroplast2
NA: 2
23106-24734
25442-25894
CDS
CDS
-
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Stegnogramma sagittifoliaChloroplast4
NA: 2
U-to-C: 2
20518-22182
21360
22885-23316
23202
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Takakia lepidozioidesChloroplast2
NA: 2
10800-11231
12002-13612
NA
NA
+
+
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast4
NA: 2
U-to-C: 2
20417-22081
21253
22770-23201
23087
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast3
NA: 2
U-to-C: 1
20451-22115
22802-23233
23119
CDS
CDS
NA
-
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast4
NA: 2
U-to-C: 2
20507-22171
21343
22878-23309
23195
CDS
NA
CDS
NA
-
+
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Sites Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Sep 2026 (version 2.0)