SLC1 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

Os06g0710800

Chloroplast

atpA

1148

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

matK

1252

CDS

C-to-U

CAU=>UAU

H=>Y

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhA

1070

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhA

473

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhA

563

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

1481

CDS

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

467

CDS

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

586

CDS

C-to-U

CAU=>UAU

H=>Y

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

611

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

704

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

737

CDS

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

830

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhB

836

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhD

878

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhF

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhG

347

CDS

C-to-U

CCA=>CUA

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

ndhG

5'UTR

-10

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

rpl2

CDS

C-to-U

ACG=>AUG

T=>M

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

rpoB

467

CDS

C-to-U

UCG=>UUG

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

rpoB

545

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

rpoB

560

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

rpoC2

4106

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	NA	NA	NA	32297039

Oryza sativa

Os06g0710800

Chloroplast

rps14

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

rps2

134

CDS

C-to-U

ACA=>AUA

T=>I

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

rps8

182

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Oryza sativa

Os06g0710800

Chloroplast

ycf3

185

CDS

C-to-U

ACG=>AUG

T=>M

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Zhonghua 11	WT	Control	Control	Control	Normal wild-type phenotype	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	None	32297039
Zhonghua 11	slc1	G deletion	A single-base (G) deletion was detected in the first exon of Os06g0710800 in the slc1 mutant.	Heterozygous	A lethal chlorosis phenotype from germination to the third-leaf stage. The slc1 mutant leaves showed extremely low contents of photosynthetic pigments and abnormal chloroplast development, and were severely defective in photosynthesis.	Leaf	At the third-leaf stage	RT-PCR, and the cDNA sequences were compared to identify C t	100.00%	Complete	Similar	32297039

Editing Factor:	SLC1
Synonym:	OsSLC1
Description:	Knockout and complementation experiments further confirmed that OsSLC1 is responsible for the seedling-lethal chlorosis phenotype in the slc1 mutant; OsSLC1 was preferentially expressed in green leaves, and encoded a chloroplast-localized PPR protein harboring 12 PPR motifs; Loss-of-function of OsSLC1 affected the intron splicing of multiple group II introns, and especially precluded the intron splicing of rps16, and resulted in significant increase in the transcript levels of 3 chloroplast ribosomal RNAs and 16 chloroplast development-related and photosynthesis-related genes, and in significant reduction in the transcript levels of 1 chloroplast ribosomal RNAs and 2 chloroplast development-related and photosynthesis-related genes
Protein Family:	PPR
Subclass:	P
Physical Interaction:	NA
Construct Structure:	P
Gene ID & Species:	Os06g0710800 (Oryza sativa)
Edited Gene(s):	atpA matK ndhA ndhB ndhD ndhF ndhG rpl2 rpoB rpoC2 rps2 rps8 rps14 ycf3
Editing Type(s):	C-to-U (52)
Publication(s):	[1] OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival., Rice (New York, N.Y.), 2020. [PMID=32297039]

Summary

Editing Details