Introduction

Divergent Sites

The GenoBaits Soy40K is a liquid phase genotyping system with ~40,000 variation sites. It was a designed according to the 27 soybeans pan-genome, 2,898 accession variation data and 49 function-aware genes. This genotyping platform well reflected the genetic structure of soybean and performed well in analysis such as gene/QTL mapping and GWAS. The GenoBaits Soy40K array designed with GBTS system based on GenoBaits, which was more flexible and low-cost in genotyping practice. Along with the 40K sites array, we introduced a series of products with 20K, 10K and 5K and foreground sites for different demands. These products was developed by cooperation with ,MolBreeding Biotechnology Co., Ltd.

Citation: Liu, Y., Liu, S., Zhang, Z., Ni, L., Chen, X., Ge, Y., Zhou, G., and Tian, Z. (2022). GenoBaits Soy40K: a highly flexible and low-cost SNP array for soybean studies. Science China Life Sciences. 65.

Feature and statistics

Design Flow

Variants Distribution

Variants Interval

Variants Annoation

Variants Annoation Intergenic 29.1% 12.2% 58.7% 12.7% 13.8% 43.2% 56.8% 73.5% Intronic UTR Exonic Synonymous Missense 3-kb promoter Genic

Loci Information

Chr Position REF ALT Structure type1 Structure type2 Function type

Accession No.

vs

Accession Name

vs

Chr Position Sample1 Genotype Sample2 Genotype Structure type1 Structure type2 Function type