1. TCOD
  2. Assembly
  3. areca_palm_Reyan

Detail information of areca_palm_Reyan

Organism name:   Areca catechu

Cultivar:   Reyan#1

Bioproject:   CNP0000517

Submitter:   Coconut Research Institute

Year:   2021

Assembly level:   Chromosome

Sequencing technology   Illumina; PacBio; Hi-C

Genome coverage   240×

Total sequence length:   2,513,067,666 bp

chromosomes and scaffolds:   16 chromosomes and 4307 scaffolds

Scaffold N50:   171,974,900 bp

median GC content(%):   41.14

Yang Y, Huang L, Xu C, et al. Chromosome-scale genome assembly of areca palm (Areca catechu). Mol Ecol Resour. 2021;21(7):2504-2519. doi:10.1111/1755-0998.13446 [OpenLBID: OLB-PM-34133844]

Chrom Size(Mb) GC% Gene
Chr1 171.9749 41.0548 2,017
Chr2 177.27754000000002 41.0107 1,668
Chr3 178.672954 41.271 2,022
Chr4 135.123568 40.5886 1,579
Chr5 123.01951799999999 40.7743 1,408
Chr6 96.290705 41.5019 1,188
Chr7 91.998238 41.0941 990
Chr8 121.938711 40.8791 1,862
Chr9 142.84826800000002 41.1842 2,460
Chr10 194.812103 41.3433 2,982
Chr11 161.18528099999997 40.9799 2,437
Chr12 123.03277 41.2018 1,501
Chr13 151.440044 41.16 1,864
Chr14 181.87842 40.9676 2,016
Chr15 204.195814 41.6052 3,081
Chr16 198.959453 41.0382 2,104
Unplace 58.419379 41.9948 390

tuli