1. TCOD
  2. Assembly
  3. longan_JDB

Detail information of longan_JDB

Organism name:   Dimocarpus longan

Cultivar:   JDB

Bioproject:   PRJCA005305

Submitter:   Institute of Fruit Tree Research-Guangdong academy of Agricultural Sciences

Year:   2022

Assembly level:   Chromosome

Sequencing technology   Illumina; PacBio; Hi-C

Genome coverage   415.0x

Total sequence length:   454,299,200 bp

chromosomes and scaffolds:   15 chromosomes and 75 scaffolds

Scaffold N50:   29,551,905 bp

median GC content(%):   33.93

Wang J, Li J, Li Z, et al. Genomic insights into longan evolution from a chromosome-level genome assembly and population genomics of longan accessions [published online ahead of print, 2022 Feb 19]. Hortic Res. 2022;9:uhac021. doi:10.1093/hr/uhac021 [OpenLBID: OLB-PM-35184175]

Chrom Size(Mb) GC% Gene
chr1 46.642598 33.9351 4,295
chr2 38.361079 33.7476 3,013
chr3 35.530432 33.719 2,959
chr4 34.654539 34.0705 3,207
chr5 32.075148 33.4695 2,723
chr6 29.922 33.9484 2,460
chr7 29.551904999999998 34.0589 2,591
chr8 28.484378 33.9634 2,225
chr9 28.096374 33.5072 2,619
chr10 27.735544 33.9186 2,091
chr11 25.393974999999998 33.6853 2,198
chr12 25.037126 34.7728 1,840
chr13 23.683344 33.4937 2,639
chr14 22.27759 33.5767 2,199
chr15 22.267656 34.1486 2,125
Unplace 4.585512 40.3754 1,169

tuli