1. TCOD
  2. Variations
  3. lch24273371

Detail information of lch24273371

Organism Litchi chinensis
Assembly lychee_FZX
Type INDEL
Position Chr3:4024790
Alleles(Ref/Alt) T/TTATG
Minor Allel Frequency(MAF) TTATG:0.0204
VarID GeneID TranscriptID ProteinID Allele Change Residue Change Consequence Type |Effect
lch24273371 LITCHI025788 LITCHI025788.m1 LITCHI025788.m1.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m10 LITCHI025788.m10.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m11 LITCHI025788.m11.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m2 LITCHI025788.m2.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m3 LITCHI025788.m3.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m4 LITCHI025788.m4.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m5 LITCHI025788.m5.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m6 LITCHI025788.m6.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m7 LITCHI025788.m7.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m8 LITCHI025788.m8.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025788 LITCHI025788.m9 LITCHI025788.m9.p -/- -/- upstream gene variant |MODIFIER
lch24273371 LITCHI025789 LITCHI025789.m1 LITCHI025789.m1.p -/- -/- downstream gene variant |MODIFIER
SampleID SampleName Cultivar CultivarId Location GenoType Population