Scientific Name
Staphylococcus aureus
Common Names
Micrococcus aureus, Micrococcus pyogenes, Staphlococcus pyogenes citreus, Staphylococcus aureus subsp. anaerobius, Staphylococcus pyogenes aureus
Bioproject
PRJCA004763
Biosample
SAMC347558
Accession No.
GWHBCRT01000000
GWH reannotation accession
GWHRA_BCRT01000000.1
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
Sir Run Run Shaw Hospital, Zhejiang University
Contact
Yan Chen, chenyan@zju.edu.cn
Sequence author(s)
Yan Chen
Released Date
2021-06-25
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
shovill v1
Sequencing & coverage
Illumina HiSeq Xten 100
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
Hemu Zhuang, et al. A random forest model based on core genome allelic profiles of MRSA forpenicillin plus potassium clavulanate susceptibility prediction. Microbial Genomics. 2021, 7(9).
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBCRT01000000 GWHRA_BCRT01000000.1 NASAAJ150671 Draft genome in contig level 2021-06-25 DNA GFF RNA Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 3,066,000
GC content 32.91%
Contig sequence No. 522
Maximum contig sequence length (bp) 252,298
Minimum contig sequence length (bp) 201
Average contig sequence length (bp) 5,874
Contig N50 (bp) 109,371
Contig N90 (bp) 13,602

Statistics of Genome Assembly

Genome size (bp) 3,066,000
GC content 32.91%
Contig sequence No. 522
Maximum contig sequence length (bp) 252,298
Minimum contig sequence length (bp) 201
Average contig sequence length (bp) 5,874
Contig N50 (bp) 109,371
Contig N90 (bp) 13,602
Annotation of Whole Genome Assembly
Protein tRNA rRNA ncRNA Pseudogene Others Total
Total 3,002 60 16 1 121 545 3,745