- Scientific Name
- Staphylococcus aureus
- Common Names
- Micrococcus aureus, Micrococcus pyogenes, Staphlococcus pyogenes citreus, Staphylococcus aureus subsp. anaerobius, Staphylococcus pyogenes aureus
- Bioproject
- PRJCA004763
- Biosample
- SAMC347594
- Accession No.
- GWHBCTD01000000
- GWH reannotation accession
- GWHRA_BCTD01000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Sir Run Run Shaw Hospital, Zhejiang University
- Contact
- Yan Chen, chenyan@zju.edu.cn
- Sequence author(s)
- Yan Chen
- Released Date
- 2021-06-25
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- shovill v1
- Sequencing & coverage
- Illumina HiSeq Xten 100
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Hemu Zhuang, et al. A random forest model based on core genome allelic profiles of MRSA forpenicillin plus potassium clavulanate susceptibility prediction. Microbial Genomics. 2021, 7(9).
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBCTD01000000 | GWHRA_BCTD01000000.1 | NASAAK150805 | Draft genome in contig level | 2021-06-25 |
DNA
GFF
RNA
Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,804,784 |
| GC content | 32.69% |
| Contig sequence No. | 88 |
| Maximum contig sequence length (bp) | 252,475 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 31,873 |
| Contig N50 (bp) | 93,292 |
| Contig N90 (bp) | 23,005 |
Statistics of Genome Assembly
| Genome size (bp) | 2,804,784 |
| GC content | 32.69% |
| Contig sequence No. | 88 |
| Maximum contig sequence length (bp) | 252,475 |
| Minimum contig sequence length (bp) | 211 |
| Average contig sequence length (bp) | 31,873 |
| Contig N50 (bp) | 93,292 |
| Contig N90 (bp) | 23,005 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 2,648 | 59 | 17 | 1 | 91 | 110 | 2,926 |