Difference between revisions of "LncRNAWiki:Featured"

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{|class="wikitable sortable" style="width:90%;text-align:center"   
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{|class="wikitable" style="width:90%;text-align:center"   
 
|-
 
|-
−
!Name
+
!lncRNAdb name
 
!Transcript ID
 
!Transcript ID
 
!Alias
 
!Alias
 
!Description
 
!Description
 
|-
 
|-
−
|21A
+
|''21A''
 
|[[NONHSAT128494]]
 
|[[NONHSAT128494]]
 
|ncRNA 21A
 
|ncRNA 21A
 
|N/A
 
|N/A
 
|-
 
|-
−
|7SK
+
|''7SK''
 
|[[NONHSAT113149]]
 
|[[NONHSAT113149]]
 
|7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198
 
|7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198
 
|RNA, 7SK small nuclear
 
|RNA, 7SK small nuclear
 
|-
 
|-
−
|7SL
+
|''7SL''
 
|[[lnc-LRR1-1:1]]
 
|[[lnc-LRR1-1:1]]
 
|7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486
 
|7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486
 
|RNA, 7SL, cytoplasmic 1
 
|RNA, 7SL, cytoplasmic 1
 
|-
 
|-
−
|AIR
+
|''AK023948''
−
|[[ENST00000609176.1]]
 
−
|AIRN, IGF2RAS
 
−
|Antisense of IGF2R non-protein coding RNA
 
−
|-
 
−
|AK023948
 
 
|[[NONHSAT129210]]
 
|[[NONHSAT129210]]
 
|
 
|
 
|N/A
 
|N/A
 
|-
 
|-
−
|BC200
+
|''BC200''
 
|[[lnc-EPCAM-1:2]]
 
|[[lnc-EPCAM-1:2]]
 
|BCYRN1,BC200a, NCRNA00004, LINC00004
 
|BCYRN1,BC200a, NCRNA00004, LINC00004
 
|BCYRN1, brain cytoplasmic RNA 1
 
|BCYRN1, brain cytoplasmic RNA 1
 
|-
 
|-
−
|CYP4A22-AS1
+
|''CYP4A22-AS1''
 
|[[ENST00000444042.2]]
 
|[[ENST00000444042.2]]
 
|Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506
 
|Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506
 
|CYP4A22 antisense RNA 1
 
|CYP4A22 antisense RNA 1
 
|-
 
|-
−
|cyrano
+
|''cyrano''
 
|[[ENST00000500949.2]]
 
|[[ENST00000500949.2]]
 
|LOC729082, linc-NUSAP1-1, OIP5-AS1
 
|LOC729082, linc-NUSAP1-1, OIP5-AS1
 
|OIP5 antisense RNA 1
 
|OIP5 antisense RNA 1
 
|-
 
|-
−
|DHFR upstream transcripts
+
|''DHFR upstream transcripts''
 
|[[NONHSAT102417]]
 
|[[NONHSAT102417]]
 
| DHFR minor transcript 5'-UTR, ENSG00000228716
 
| DHFR minor transcript 5'-UTR, ENSG00000228716
 
|
 
|
 
|-
 
|-
−
|DISC2
+
|''DISC2''
 
|[[NONHSAT010191]]
 
|[[NONHSAT010191]]
 
|DISC1-AS1, DISC1OS, NCRNA00015
 
|DISC1-AS1, DISC1OS, NCRNA00015
 
|disrupted in schizophrenia 2 (non-protein coding)
 
|disrupted in schizophrenia 2 (non-protein coding)
 
|-
 
|-
−
|EGO
+
|''EGO''
 
|[[NONHSAT087635]]
 
|[[NONHSAT087635]]
 
|EGOT, ENSG00000235947
 
|EGOT, ENSG00000235947
 
|Eosinophil granule ontogeny (EGO) RNA
 
|Eosinophil granule ontogeny (EGO) RNA
 
|-
 
|-
−
|Emx2os
+
|''Emx2os''
 
|[[lnc-PDZD8-3:1]]
 
|[[lnc-PDZD8-3:1]]
 
|ENSG00000229847
 
|ENSG00000229847
 
|Emx2 opposite strand transcript.
 
|Emx2 opposite strand transcript.
 
|-
 
|-
−
|Evf2
+
|''Evf2''
 
|[[lnc-DLX5-3:1]]
 
|[[lnc-DLX5-3:1]]
 
|Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
 
|Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
 
|
 
|
 
|-
 
|-
−
|GAS5
+
|''GAS5''
 
|[[NONHSAT007663]]
 
|[[NONHSAT007663]]
 
|SNHG2, ENSG00000234741  
 
|SNHG2, ENSG00000234741  
 
|
 
|
 
|-
 
|-
−
|Gomafu
+
|''Gomafu''
 
|[[lnc-CRYBA4-2:1]]
 
|[[lnc-CRYBA4-2:1]]
 
|MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783
 
|MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783
 
|MIAT: myocardial infarction associated transcript ([http://www.ncbi.nlm.nih.gov/pubmed/17066261 (Ishii 2006)]).<br>RNCR2: retinal noncoding RNA 2 ([http://www.ncbi.nlm.nih.gov/pubmed/15226823 (Blackshaw 2004)]).
 
|MIAT: myocardial infarction associated transcript ([http://www.ncbi.nlm.nih.gov/pubmed/17066261 (Ishii 2006)]).<br>RNCR2: retinal noncoding RNA 2 ([http://www.ncbi.nlm.nih.gov/pubmed/15226823 (Blackshaw 2004)]).
 
|-
 
|-
−
|H19
+
|''H19''
 
|[[NONHSAT017465]]
 
|[[NONHSAT017465]]
 
|Q96MK8,ENSG00000130600
 
|Q96MK8,ENSG00000130600
 
|H19, imprinted maternally expressed transcript (non-protein coding)
 
|H19, imprinted maternally expressed transcript (non-protein coding)
 
|-
 
|-
−
|HAR1A
+
|''HAR1A''
 
|[[lnc-BIRC7-2:1]]
 
|[[lnc-BIRC7-2:1]]
 
|HAR1F, ENSG00000238820
 
|HAR1F, ENSG00000238820
 
|highly accelerated region 1A
 
|highly accelerated region 1A
 
|-
 
|-
−
|HAR1B
+
|''HAR1B''
 
|[[ENST00000447910.2]]
 
|[[ENST00000447910.2]]
 
|HAR1R, ENSG00000231133
 
|HAR1R, ENSG00000231133
 
|highly accelerated region 1B
 
|highly accelerated region 1B
 
|-
 
|-
−
|HOTAIR
+
|''HOTAIR''
 
|[[NONHSAT028508]]
 
|[[NONHSAT028508]]
 
|Gm16258, Hox antisense intergenic RNA, ENSG00000228630  
 
|Gm16258, Hox antisense intergenic RNA, ENSG00000228630  
 
|Hox antisense intergenic RNA
 
|Hox antisense intergenic RNA
 
|-
 
|-
−
|HOTAIRM1
+
|''HOTAIRM1''
 
|[[lnc-EVX1-12:1]]
 
|[[lnc-EVX1-12:1]]
 
|HIT06113, HIT92376, linc1548, ENSG00000233429
 
|HIT06113, HIT92376, linc1548, ENSG00000233429
 
|HOXA transcript antisense RNA, myeloid-specific 1
 
|HOXA transcript antisense RNA, myeloid-specific 1
 
|-
 
|-
−
|HOTTIP
+
|''HOTTIP''
 
|[[NONHSAT119717]]
 
|[[NONHSAT119717]]
 
|HOXA13as, HIT18844, NCRNA00213, ENSG00000243766
 
|HOXA13as, HIT18844, NCRNA00213, ENSG00000243766
 
|HOXA transcript at the distal tip
 
|HOXA transcript at the distal tip
 
|-
 
|-
−
|Hoxa11as
+
|''Hoxa11as''
 
|[[NONHSAT119704]]
 
|[[NONHSAT119704]]
 
|Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990
 
|Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990
 
|HOXA11 antisense RNA
 
|HOXA11 antisense RNA
 
|-
 
|-
−
|HOXA3as
+
|''HOXA3as''
 
|[[NONHSAT119676]]
 
|[[NONHSAT119676]]
 
|HIT12844, HIT94153, HOXA-AS2, ENSG00000253552
 
|HIT12844, HIT94153, HOXA-AS2, ENSG00000253552
 
|N/A
 
|N/A
 
|-
 
|-
−
|HOXA6as
+
|''HOXA6as''
 
|[[lnc-EVX1-9:1]]
 
|[[lnc-EVX1-9:1]]
 
|HIT16800  
 
|HIT16800  
 
|N/A
 
|N/A
 
|-
 
|-
−
|HULC
+
|''HULC''
 
|[[NONHSAT107640]]
 
|[[NONHSAT107640]]
 
|ENSG00000251164
 
|ENSG00000251164
 
|hepatocellular carcinoma up-regulated long non-coding RNA
 
|hepatocellular carcinoma up-regulated long non-coding RNA
 
|-
 
|-
−
|IPW
+
|''IPW''
 
|[[NONHSAT041063]]
 
|[[NONHSAT041063]]
 
|NCRNA00002
 
|NCRNA00002
 
|imprinted in Prader-Willi syndrome
 
|imprinted in Prader-Willi syndrome
 
|-
 
|-
−
|Jpx
+
|''Jpx''
 
|[[lnc-ZCCHC13-1:1]]
 
|[[lnc-ZCCHC13-1:1]]
 
|Enox, NCRNA00183, ENSG00000225470  
 
|Enox, NCRNA00183, ENSG00000225470  
 
|Enox (expressed neighbor of Xist)
 
|Enox (expressed neighbor of Xist)
 
|-
 
|-
−
|Kcnq1ot1
+
|''Kcnq1ot1''
 
|[[NONHSAT017524]]
 
|[[NONHSAT017524]]
 
|LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821
 
|LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821
 
|Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
 
|Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
 
|-
 
|-
−
|KRASP1
+
|''KRASP1''
 
|[[NONHSAT113225]]
 
|[[NONHSAT113225]]
 
|ENSG00000220635  
 
|ENSG00000220635  
 
|KRAS Pseudogene 1
 
|KRAS Pseudogene 1
 
|-
 
|-
−
|LINC00568
+
|''LINC00568''
 
|[[ENST00000416894.1]]
 
|[[ENST00000416894.1]]
 
|Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1
 
|Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1
 
|focally amplified long non-coding RNA in epithelial cancer
 
|focally amplified long non-coding RNA in epithelial cancer
 
|-
 
|-
−
|lincRNA-RoR
+
|''lincRNA-RoR''
 
|[[NONHSAT059436]]
 
|[[NONHSAT059436]]
 
|lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609
 
|lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609
 
|long intergenic non-protein coding RNA, regulator of reprogramming
 
|long intergenic non-protein coding RNA, regulator of reprogramming
 
|-
 
|-
−
|LOC100887755
+
|''LOC100887755''
 
|[[lnc-SNAI1-1:1]]
 
|[[lnc-SNAI1-1:1]]
 
|Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1
 
|Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1
 
|translation regulatory long non-coding RNA 1
 
|translation regulatory long non-coding RNA 1
 
|-
 
|-
−
|LOC285194
+
|''LOC285194''
 
|[[NONHSAT091315]]
 
|[[NONHSAT091315]]
 
|LSAMP-AS3, ENSG00000243197,TUSC7
 
|LSAMP-AS3, ENSG00000243197,TUSC7
 
|tumor suppressor candidate 7 (non-protein coding)
 
|tumor suppressor candidate 7 (non-protein coding)
 
|-
 
|-
−
|LUST
+
|''LUST''
 
|[[NONHSAT089783]]
 
|[[NONHSAT089783]]
 
|Je2, ENSG00000003756  
 
|Je2, ENSG00000003756  
 
|LUCA-15-specific transcript.
 
|LUCA-15-specific transcript.
 
|-
 
|-
−
|Malat1
+
|''Malat1''
 
|[[ENST00000534336.1]]
 
|[[ENST00000534336.1]]
 
|Neat2, ENSG00000251562  
 
|Neat2, ENSG00000251562  
 
|Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
 
|Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
 
|-
 
|-
−
|mascRNA
+
|''mascRNA''
 
|[[lnc-SCYL1-1:5]]
 
|[[lnc-SCYL1-1:5]]
 
|Malat1
 
|Malat1
 
|mascRNA (MALAT1-associated small cytoplasmic RNA)
 
|mascRNA (MALAT1-associated small cytoplasmic RNA)
 
|-
 
|-
−
|MEG3
+
|''MEG3''
 
|[[NONHSAT039745]]
 
|[[NONHSAT039745]]
 
|Gtl2, ENSG00000214548
 
|Gtl2, ENSG00000214548
 
|maternally expressed 3 (non-protein coding)
 
|maternally expressed 3 (non-protein coding)
 
|-
 
|-
−
|ncR-uPAR
+
|''ncR-PAR''
 
|[[NONHSAT102247]]
 
|[[NONHSAT102247]]
 
|NCRUPAR, ENSG00000225407
 
|NCRUPAR, ENSG00000225407
 
|non-protein coding RNA, upstream of F2R/PAR1
 
|non-protein coding RNA, upstream of F2R/PAR1
 
|-
 
|-
−
|NDM29
+
|''NDM29''
 
|[[lnc-C11orf16-1:1]]
 
|[[lnc-C11orf16-1:1]]
 
|29A
 
|29A
 
|neuroblastoma differentiation marker 29 ([http://www.ncbi.nlm.nih.gov/pubmed/20581224 Castelnuovo (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/17274687 Pagano (2007)]).
 
|neuroblastoma differentiation marker 29 ([http://www.ncbi.nlm.nih.gov/pubmed/20581224 Castelnuovo (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/17274687 Pagano (2007)]).
 
|-
 
|-
−
|Nespas
+
|''Nespas''
 
|[[lnc-CTSZ-5:1]]
 
|[[lnc-CTSZ-5:1]]
 
|Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590  
 
|Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590  
 
|Nespas: neuroendocrine secretory protein (Nesp) antisense.
 
|Nespas: neuroendocrine secretory protein (Nesp) antisense.
 
|-
 
|-
−
|NRON
+
|''NRON''
 
|[[NONHSAT134764]]
 
|[[NONHSAT134764]]
 
|ENSG00000253079  
 
|ENSG00000253079  
 
|non-protein coding RNA, repressor of NFAT
 
|non-protein coding RNA, repressor of NFAT
 
|-
 
|-
−
|NTT
+
|''NTT''
 
|[[NONHSAT115106]]
 
|[[NONHSAT115106]]
 
|
 
|
 
|noncoding transcript in T cells.
 
|noncoding transcript in T cells.
 
|-
 
|-
−
|Otx2os1
+
|''Otx2os1''
 
|[[lnc-C14orf101-5:1]]
 
|[[lnc-C14orf101-5:1]]
 
|OTX2-AS1, ENSG00000248550
 
|OTX2-AS1, ENSG00000248550
 
|OTX2 opposite strand transcript 1
 
|OTX2 opposite strand transcript 1
 
|-
 
|-
−
|PANDA
+
|''PANDA''
 
|[[lnc-CDKN1A-1:1]]
 
|[[lnc-CDKN1A-1:1]]
 
|P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR
 
|P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR
 
|promoter of CDKN1A antisense DNA damage activated RNA
 
|promoter of CDKN1A antisense DNA damage activated RNA
 
|-
 
|-
−
|PCGEM1
+
|''PCGEM1''
 
|[[NONHSAT076153]]
 
|[[NONHSAT076153]]
 
|ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA  
 
|ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA  
 
|Prostate-specific transcript 1
 
|Prostate-specific transcript 1
 
|-
 
|-
−
|PDZK1IP1-AS1
+
|''PDZK1IP1-AS1''
 
|[[ENST00000429328.2]]
 
|[[ENST00000429328.2]]
 
|Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853
 
|Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853
 
|long intergenic non-protein coding RNA 853
 
|long intergenic non-protein coding RNA 853
 
|-
 
|-
−
|PRINS
+
|''PRINS''
 
|[[NONHSAT011777]]
 
|[[NONHSAT011777]]
 
|ENSG00000238115
 
|ENSG00000238115
 
|Psoriasis susceptibility-related RNA Gene Induced by Stress
 
|Psoriasis susceptibility-related RNA Gene Induced by Stress
 
|-
 
|-
−
|PTENP1
+
|''PTENP1''
 
|[[NONHSAT130775]]
 
|[[NONHSAT130775]]
 
|PTENpg1, PTEN2, ENSG00000237984
 
|PTENpg1, PTEN2, ENSG00000237984
 
|PTEN Pseudogene 1
 
|PTEN Pseudogene 1
 
|-
 
|-
−
|Rian
+
|''Rian''
 
|[[ENST00000553584.1]]
 
|[[ENST00000553584.1]]
 
|Irm, MEG8 and Bsr, linc1458, ENSG00000258399  
 
|Irm, MEG8 and Bsr, linc1458, ENSG00000258399  
 
|Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
 
|Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
 
|-
 
|-
−
|RNCR3
+
|''RNCR3''
 
|[[lnc-TNKS-1:1]]
 
|[[lnc-TNKS-1:1]]
 
|A930011O12Rik, LOC157627, ENSG00000253230
 
|A930011O12Rik, LOC157627, ENSG00000253230
 
|Retinal noncoding RNA 3
 
|Retinal noncoding RNA 3
 
|-
 
|-
−
|SAF
+
|''SAF''
 
|[[NONHSAT015489]]
 
|[[NONHSAT015489]]
 
|FAS-AS,ENSG00000026103,FAS-AS1
 
|FAS-AS,ENSG00000026103,FAS-AS1
 
|FAS antisense RNA 1
 
|FAS antisense RNA 1
 
|-
 
|-
−
|SCA8
+
|''SCA8''
 
|[[NONHSAT034251]]
 
|[[NONHSAT034251]]
 
|ATXN8OS, KLHL1AS, ENSG00000230223
 
|ATXN8OS, KLHL1AS, ENSG00000230223
 
|Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
 
|Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
 
|-
 
|-
−
|SNHG1
+
|''SNHG1''
 
|[[NONHSAT021826]]
 
|[[NONHSAT021826]]
 
|UHG, ENSG00000255717
 
|UHG, ENSG00000255717
 
|SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
 
|SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
 
|-
 
|-
−
|SNHG3
+
|''SNHG3''
 
|[[lnc-OR10H5-1:1]]
 
|[[lnc-OR10H5-1:1]]
 
|U17HG, linc1343, ENSG00000242125
 
|U17HG, linc1343, ENSG00000242125
 
|Small nucleolar RNA host gene 3
 
|Small nucleolar RNA host gene 3
 
|-
 
|-
−
|SNHG4
+
|''SNHG4''
 
|[[NONHSAT104072]]
 
|[[NONHSAT104072]]
 
|U19H, ENSG00000200959
 
|U19H, ENSG00000200959
 
|Small nucleolar RNA host gene 4
 
|Small nucleolar RNA host gene 4
 
|-
 
|-
−
|SNHG5
+
|''SNHG5''
 
|[[NONHSAT054526]]
 
|[[NONHSAT054526]]
 
|U50HG, ENSG00000203875
 
|U50HG, ENSG00000203875
 
|Small nucleolar RNA host gene 5
 
|Small nucleolar RNA host gene 5
 
|-
 
|-
−
|SNHG6
+
|''SNHG6''
 
|[[lnc-TCF24-2:3]]
 
|[[lnc-TCF24-2:3]]
 
|U87HG, ENSG00000245910
 
|U87HG, ENSG00000245910
 
|Small nucleolar RNA host gene 6
 
|Small nucleolar RNA host gene 6
 
|-
 
|-
−
|SPRY4-IT1
+
|''SPRY4-IT1''
 
|[[lnc-NDFIP1-3:1]]
 
|[[lnc-NDFIP1-3:1]]
 
|AK024556, ENSG00000274721
 
|AK024556, ENSG00000274721
 
|SPRY4 intronic transcript 1 (non-protein coding)
 
|SPRY4 intronic transcript 1 (non-protein coding)
 
|-
 
|-
−
|SRA
+
|''SRA''
 
|[[lnc-SRA1-1:1]]
 
|[[lnc-SRA1-1:1]]
 
|SRA1, ENSG00000213523
 
|SRA1, ENSG00000213523
 
|Steroid receptor RNA Activator
 
|Steroid receptor RNA Activator
 
|-
 
|-
−
|TEA-ncRNAs
+
|''TEA-ncRNAs''
 
|[[NONHSAT035776]]
 
|[[NONHSAT035776]]
 
|ENSG00000251002
 
|ENSG00000251002
 
|T early alpha
 
|T early alpha
 
|-
 
|-
−
|Tmevpg1
+
|''Tmevpg1''
 
|[[ENST00000538665.1]]
 
|[[ENST00000538665.1]]
 
|ENSG00000255733
 
|ENSG00000255733
 
|Theiler's murine encephalomyelitis virus persistence candidate gene 1
 
|Theiler's murine encephalomyelitis virus persistence candidate gene 1
 
|-
 
|-
−
|TncRNA
+
|''TncRNA''
 
|[[NONHSAT022116]]
 
|[[NONHSAT022116]]
 
|TSU
 
|TSU
 
|TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
 
|TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
 
|-
 
|-
−
|TUG1
+
|''TUG1''
 
|[[NONHSAT084827]]
 
|[[NONHSAT084827]]
 
|ENSG00000253352
 
|ENSG00000253352
 
|taurine up-regulated gene 1 [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].
 
|taurine up-regulated gene 1 [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].
 
|-
 
|-
−
|UCA1
+
|''UCA1''
 
|[[lnc-OR10H5-1:1]]
 
|[[lnc-OR10H5-1:1]]
 
|UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049
 
|UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049
 
|urothelial cancer associated 1 (non-protein coding)
 
|urothelial cancer associated 1 (non-protein coding)
 
|-
 
|-
−
|UM9-5
+
|''UM9-5''
 
|[[NONHSAT095745]]
 
|[[NONHSAT095745]]
 
|NCRNA00099, KCNIP4-IT1
 
|NCRNA00099, KCNIP4-IT1
 
|KCNIP4 intronic transcript 1 (non-protein coding)
 
|KCNIP4 intronic transcript 1 (non-protein coding)
 
|-
 
|-
−
|WT1-AS
+
|''WT1-AS''
 
|[[lnc-EIF3M-1:1]]
 
|[[lnc-EIF3M-1:1]]
 
|WIT1, ENSG00000183242
 
|WIT1, ENSG00000183242
 
|WT1 (Wilms' tumor 1) antisense transcript
 
|WT1 (Wilms' tumor 1) antisense transcript
 
|-
 
|-
−
|Xist
+
|''Xist''
 
|[[NONHSAT137541]]
 
|[[NONHSAT137541]]
 
|ENSG00000229807
 
|ENSG00000229807
 
|X inactive-specific transcript
 
|X inactive-specific transcript
 
|-
 
|-
−
|Zeb2NAT
+
|''Zeb2NAT''
 
|[[NONHSAT074775]]
 
|[[NONHSAT074775]]
 
|ZEB2AS, ENSG00000238057
 
|ZEB2AS, ENSG00000238057
 
|Zeb2 natural antisense transcript
 
|Zeb2 natural antisense transcript
 
|-
 
|-
−
|Zfas1
+
|''Zfas1''
 
|[[NONHSAT080206]]
 
|[[NONHSAT080206]]
 
|Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410
 
|Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410
 
|Zinc finger antisense 1
 
|Zinc finger antisense 1
 
|-
 
|-
−
|Zfhx2as
+
|''Zfhx2as''
 
|[[ENST00000554403.1]]
 
|[[ENST00000554403.1]]
 
|Zfh-5AS, ENSG00000157306
 
|Zfh-5AS, ENSG00000157306
 
|zinc finger homeobox 2, antisense
 
|zinc finger homeobox 2, antisense
 
|-
 
|-
−
|AK082072
+
|''AK082072''
 
|[[lnc-RASA1-3:23]],[[lnc-RASA1-3:25]]
 
|[[lnc-RASA1-3:23]],[[lnc-RASA1-3:25]]
 
|linc-POLR3G-8, ENSG00000247828
 
|linc-POLR3G-8, ENSG00000247828
 
|N/A
 
|N/A
 
|-
 
|-
−
|Alpha 250/ Alpha 280
+
|''Alpha 250''/ ''Alpha 280''
 
|[[NONHSAT104559]],[[lnc-NDST1-1:2]]
 
|[[NONHSAT104559]],[[lnc-NDST1-1:2]]
 
|N/A
 
|N/A
 
|N/A
 
|N/A
 
|-
 
|-
−
|ANRIL
+
|''ANRIL''
 
|[[NONHSAT130421]],[[lnc-C9orf53-2:1]]
 
|[[NONHSAT130421]],[[lnc-C9orf53-2:1]]
 
|CDKN2B-AS1, p15AS, ENSG00000240498
 
|CDKN2B-AS1, p15AS, ENSG00000240498
 
|Antisense noncoding RNA in the INK4 locus
 
|Antisense noncoding RNA in the INK4 locus
 
|-
 
|-
−
|BACE1AS
+
|''BACE1AS''
 
|[[NONHSAT024403]],[[lnc-RNF214-1:2]]
 
|[[NONHSAT024403]],[[lnc-RNF214-1:2]]
 
|NCRNA00177, BACE1-AS; FJ573250
 
|NCRNA00177, BACE1-AS; FJ573250
 
|BACE1 antisense RNA
 
|BACE1 antisense RNA
 
|-
 
|-
−
|Beta-globin transcripts
+
|''Beta-globin transcripts''
 
|[[NONHSAT017676]],[[NONHSAT017675]],[[NONHSAT017674]]
 
|[[NONHSAT017676]],[[NONHSAT017675]],[[NONHSAT017674]]
 
|N/A
 
|N/A
 
|N/A
 
|N/A
 
|-
 
|-
−
|BX118339
+
|''BX118339''
 
|[[lnc-PRL-6:2]],[[lnc-PRL-6:1]]
 
|[[lnc-PRL-6:2]],[[lnc-PRL-6:1]]
 
|Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678
 
|Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678
 
|N/A
 
|N/A
 
|-
 
|-
−
|CAR Intergenic 10
+
|''CAR Intergenic 10''
 
|[[NONHSAT016928]],[[lnc-FANK1-3:1]]
 
|[[NONHSAT016928]],[[lnc-FANK1-3:1]]
 
|Intergenic10, CR611911, AK055628
 
|Intergenic10, CR611911, AK055628
 
|Chromatin Associated RNA 10
 
|Chromatin Associated RNA 10
 
|-
 
|-
−
|Dio3os
+
|''Dio3os''
 
|[[NONHSAT040032]],[[NONHSAT040039]]
 
|[[NONHSAT040032]],[[NONHSAT040039]]
 
|Dio3as, ENSG00000258498
 
|Dio3as, ENSG00000258498
 
|DIO3 opposite strand/antisense RNA (head to head)
 
|DIO3 opposite strand/antisense RNA (head to head)
 
|-
 
|-
−
|KDM5BAS1
+
|''KDM5BAS1''
 
|[[ENST00000425295.1]],[[ENST00000553157.1]],[[ENST00000417262.1]]
 
|[[ENST00000425295.1]],[[ENST00000553157.1]],[[ENST00000417262.1]]
 
|Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288
 
|Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288
 
|N/A
 
|N/A
 
|-
 
|-
−
|LINC00570
+
|''LINC00570''
 
|[[ENST00000437795.1]],[[ENST00000432665.1]],[[ENST00000453100.1]],[[ENST00000417473.2]]
 
|[[ENST00000437795.1]],[[ENST00000432665.1]],[[ENST00000453100.1]],[[ENST00000417473.2]]
 
|ncRNA-a5,ENSG00000224177,
 
|ncRNA-a5,ENSG00000224177,
 
|long intergenic non-protein coding RNA 570
 
|long intergenic non-protein coding RNA 570
 
|-
 
|-
−
|NEAT1
+
|''NEAT1''
 
|[[ENST00000501122.2]],[[NONHSAT022111]]
 
|[[ENST00000501122.2]],[[NONHSAT022111]]
 
|MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532
 
|MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532
 
|Nuclear enriched abundant transcript 1.
 
|Nuclear enriched abundant transcript 1.
 
|-
 
|-
−
|ST7OT
+
|''ST7OT''
 
|[[NONHSAT122926]],[[NONHSAT122918]],[[NONHSAT122914]],[[NONHSAT122932]]
 
|[[NONHSAT122926]],[[NONHSAT122918]],[[NONHSAT122914]],[[NONHSAT122932]]
 
|ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188
 
|ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188
 
|N/A
 
|N/A
 
|-
 
|-
−
|snaR
+
|''snaR''
 
|[[lnc-BSPH1-1:1]],[[lnc-BSPH1-2:1]]
 
|[[lnc-BSPH1-1:1]],[[lnc-BSPH1-2:1]]
 
|small NF90-associated RNAs
 
|small NF90-associated RNAs
 
|small NF90-associated RNAs
 
|small NF90-associated RNAs
 
|-
 
|-
−
|Y RNAs
+
|''Y RNAs''
 
|[[lnc-PDIA4-1:1]]
 
|[[lnc-PDIA4-1:1]]
 
|N/A
 
|N/A
 
|N/A
 
|N/A
 
|-
 
|-
−
|PR antisense transcripts
+
|''PR antisense transcripts''
 
|[[NONHSAT023851]]
 
|[[NONHSAT023851]]
 
|N/A
 
|N/A
 
|N/A
 
|N/A
 
|}
 
|}

Revision as of 02:10, 17 October 2014

lncRNAdb name Transcript ID Alias Description
21A NONHSAT128494 ncRNA 21A N/A
7SK NONHSAT113149 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 RNA, 7SK small nuclear
7SL lnc-LRR1-1:1 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 RNA, 7SL, cytoplasmic 1
AK023948 NONHSAT129210 N/A
BC200 lnc-EPCAM-1:2 BCYRN1,BC200a, NCRNA00004, LINC00004 BCYRN1, brain cytoplasmic RNA 1
CYP4A22-AS1 ENST00000444042.2 Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 CYP4A22 antisense RNA 1
cyrano ENST00000500949.2 LOC729082, linc-NUSAP1-1, OIP5-AS1 OIP5 antisense RNA 1
DHFR upstream transcripts NONHSAT102417 DHFR minor transcript 5'-UTR, ENSG00000228716
DISC2 NONHSAT010191 DISC1-AS1, DISC1OS, NCRNA00015 disrupted in schizophrenia 2 (non-protein coding)
EGO NONHSAT087635 EGOT, ENSG00000235947 Eosinophil granule ontogeny (EGO) RNA
Emx2os lnc-PDZD8-3:1 ENSG00000229847 Emx2 opposite strand transcript.
Evf2 lnc-DLX5-3:1 Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
GAS5 NONHSAT007663 SNHG2, ENSG00000234741
Gomafu lnc-CRYBA4-2:1 MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 MIAT: myocardial infarction associated transcript ((Ishii 2006)).
RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)).
H19 NONHSAT017465 Q96MK8,ENSG00000130600 H19, imprinted maternally expressed transcript (non-protein coding)
HAR1A lnc-BIRC7-2:1 HAR1F, ENSG00000238820 highly accelerated region 1A
HAR1B ENST00000447910.2 HAR1R, ENSG00000231133 highly accelerated region 1B
HOTAIR NONHSAT028508 Gm16258, Hox antisense intergenic RNA, ENSG00000228630 Hox antisense intergenic RNA
HOTAIRM1 lnc-EVX1-12:1 HIT06113, HIT92376, linc1548, ENSG00000233429 HOXA transcript antisense RNA, myeloid-specific 1
HOTTIP NONHSAT119717 HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 HOXA transcript at the distal tip
Hoxa11as NONHSAT119704 Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 HOXA11 antisense RNA
HOXA3as NONHSAT119676 HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 N/A
HOXA6as lnc-EVX1-9:1 HIT16800 N/A
HULC NONHSAT107640 ENSG00000251164 hepatocellular carcinoma up-regulated long non-coding RNA
IPW NONHSAT041063 NCRNA00002 imprinted in Prader-Willi syndrome
Jpx lnc-ZCCHC13-1:1 Enox, NCRNA00183, ENSG00000225470 Enox (expressed neighbor of Xist)
Kcnq1ot1 NONHSAT017524 LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
KRASP1 NONHSAT113225 ENSG00000220635 KRAS Pseudogene 1
LINC00568 ENST00000416894.1 Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 focally amplified long non-coding RNA in epithelial cancer
lincRNA-RoR NONHSAT059436 lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 long intergenic non-protein coding RNA, regulator of reprogramming
LOC100887755 lnc-SNAI1-1:1 Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 translation regulatory long non-coding RNA 1
LOC285194 NONHSAT091315 LSAMP-AS3, ENSG00000243197,TUSC7 tumor suppressor candidate 7 (non-protein coding)
LUST NONHSAT089783 Je2, ENSG00000003756 LUCA-15-specific transcript.
Malat1 ENST00000534336.1 Neat2, ENSG00000251562 Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
mascRNA lnc-SCYL1-1:5 Malat1 mascRNA (MALAT1-associated small cytoplasmic RNA)
MEG3 NONHSAT039745 Gtl2, ENSG00000214548 maternally expressed 3 (non-protein coding)
ncR-PAR NONHSAT102247 NCRUPAR, ENSG00000225407 non-protein coding RNA, upstream of F2R/PAR1
NDM29 lnc-C11orf16-1:1 29A neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)).
Nespas lnc-CTSZ-5:1 Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 Nespas: neuroendocrine secretory protein (Nesp) antisense.
NRON NONHSAT134764 ENSG00000253079 non-protein coding RNA, repressor of NFAT
NTT NONHSAT115106 noncoding transcript in T cells.
Otx2os1 lnc-C14orf101-5:1 OTX2-AS1, ENSG00000248550 OTX2 opposite strand transcript 1
PANDA lnc-CDKN1A-1:1 P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR promoter of CDKN1A antisense DNA damage activated RNA
PCGEM1 NONHSAT076153 ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA Prostate-specific transcript 1
PDZK1IP1-AS1 ENST00000429328.2 Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 long intergenic non-protein coding RNA 853
PRINS NONHSAT011777 ENSG00000238115 Psoriasis susceptibility-related RNA Gene Induced by Stress
PTENP1 NONHSAT130775 PTENpg1, PTEN2, ENSG00000237984 PTEN Pseudogene 1
Rian ENST00000553584.1 Irm, MEG8 and Bsr, linc1458, ENSG00000258399 Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
RNCR3 lnc-TNKS-1:1 A930011O12Rik, LOC157627, ENSG00000253230 Retinal noncoding RNA 3
SAF NONHSAT015489 FAS-AS,ENSG00000026103,FAS-AS1 FAS antisense RNA 1
SCA8 NONHSAT034251 ATXN8OS, KLHL1AS, ENSG00000230223 Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
SNHG1 NONHSAT021826 UHG, ENSG00000255717 SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
SNHG3 lnc-OR10H5-1:1 U17HG, linc1343, ENSG00000242125 Small nucleolar RNA host gene 3
SNHG4 NONHSAT104072 U19H, ENSG00000200959 Small nucleolar RNA host gene 4
SNHG5 NONHSAT054526 U50HG, ENSG00000203875 Small nucleolar RNA host gene 5
SNHG6 lnc-TCF24-2:3 U87HG, ENSG00000245910 Small nucleolar RNA host gene 6
SPRY4-IT1 lnc-NDFIP1-3:1 AK024556, ENSG00000274721 SPRY4 intronic transcript 1 (non-protein coding)
SRA lnc-SRA1-1:1 SRA1, ENSG00000213523 Steroid receptor RNA Activator
TEA-ncRNAs NONHSAT035776 ENSG00000251002 T early alpha
Tmevpg1 ENST00000538665.1 ENSG00000255733 Theiler's murine encephalomyelitis virus persistence candidate gene 1
TncRNA NONHSAT022116 TSU TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
TUG1 NONHSAT084827 ENSG00000253352 taurine up-regulated gene 1 (Young (2005)).
UCA1 lnc-OR10H5-1:1 UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049 urothelial cancer associated 1 (non-protein coding)
UM9-5 NONHSAT095745 NCRNA00099, KCNIP4-IT1 KCNIP4 intronic transcript 1 (non-protein coding)
WT1-AS lnc-EIF3M-1:1 WIT1, ENSG00000183242 WT1 (Wilms' tumor 1) antisense transcript
Xist NONHSAT137541 ENSG00000229807 X inactive-specific transcript
Zeb2NAT NONHSAT074775 ZEB2AS, ENSG00000238057 Zeb2 natural antisense transcript
Zfas1 NONHSAT080206 Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410 Zinc finger antisense 1
Zfhx2as ENST00000554403.1 Zfh-5AS, ENSG00000157306 zinc finger homeobox 2, antisense
AK082072 lnc-RASA1-3:23,lnc-RASA1-3:25 linc-POLR3G-8, ENSG00000247828 N/A
Alpha 250/ Alpha 280 NONHSAT104559,lnc-NDST1-1:2 N/A N/A
ANRIL NONHSAT130421,lnc-C9orf53-2:1 CDKN2B-AS1, p15AS, ENSG00000240498 Antisense noncoding RNA in the INK4 locus
BACE1AS NONHSAT024403,lnc-RNF214-1:2 NCRNA00177, BACE1-AS; FJ573250 BACE1 antisense RNA
Beta-globin transcripts NONHSAT017676,NONHSAT017675,NONHSAT017674 N/A N/A
BX118339 lnc-PRL-6:2,lnc-PRL-6:1 Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678 N/A
CAR Intergenic 10 NONHSAT016928,lnc-FANK1-3:1 Intergenic10, CR611911, AK055628 Chromatin Associated RNA 10
Dio3os NONHSAT040032,NONHSAT040039 Dio3as, ENSG00000258498 DIO3 opposite strand/antisense RNA (head to head)
KDM5BAS1 ENST00000425295.1,ENST00000553157.1,ENST00000417262.1 Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288 N/A
LINC00570 ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2 ncRNA-a5,ENSG00000224177, long intergenic non-protein coding RNA 570
NEAT1 ENST00000501122.2,NONHSAT022111 MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532 Nuclear enriched abundant transcript 1.
ST7OT NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932 ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188 N/A
snaR lnc-BSPH1-1:1,lnc-BSPH1-2:1 small NF90-associated RNAs small NF90-associated RNAs
Y RNAs lnc-PDIA4-1:1 N/A N/A
PR antisense transcripts NONHSAT023851 N/A N/A
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